Gene name: CST9
Reference locus (S288C): YLR394W
Gene biotype: protein_coding
Description: Chromosome stability protein 9; SUMO E3 ligase; required for synaptonemal complex formation; localizes to synapsis initiation sites on meiotic chromosomes; associates with centromeres early in meiosis, then with chromosome axes and finally with double-strand break sites that are engaged in repair by crossovers; potential Cdc28p substrate
Top 10 interactors (score): UBC9 (0.986); MSH4 (0.977); SPO22 (0.968); MMS21 (0.956); SMC5 (0.954); SPO11 (0.943); SIZ1 (0.943); MSH5 (0.941); ZIP2 (0.941); NFI1 (0.94); ZIP1 (0.937); ULP2 (0.918); UBA2 (0.899); SPO16 (0.893); AOS1 (0.867); MUS81 (0.866); SMT3 (0.86); RAD51 (0.841); SGS1 (0.823); ULP1 (0.815)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:857486-858934:+ | gene-YLR394W_AKU4011 | rna-NM_001182282.3_AKU4011 | cds-NP_013498.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:89632-91080:+ | gene-YLR394W_BG1 | rna-NM_001182282.3_BG1 | cds-NP_013498.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:895791-897239:+ | gene-YLR394W_Bruggeman | rna-NM_001182282.3_Bruggeman | cds-NP_013498.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:891318-892766:+ | gene-YLR394W_CAT1 | rna-NM_001182282.3_CAT1 | cds-NP_013498.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:893082-894530:+ | gene-YLR394W_CBS1585 | rna-NM_001182282.3_CBS1585 | cds-NP_013498.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:876723-878171:+ | gene-YLR394W_CBS436 | rna-NM_001182282.3_CBS436 | cds-NP_013498.3_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:929123-930571:+ | gene-YLR394W_CBS6412 | rna-NM_001182282.3_CBS6412 | cds-NP_013498.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:893373-894821:+ | gene-YLR394W_CBS6413 | rna-NM_001182282.3_CBS6413 | cds-NP_013498.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:892761-894209:+ | gene-YLR394W_CENPK1137D | rna-NM_001182282.3_CENPK1137D | cds-NP_013498.3_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:850029-851477:+ | gene-YLR394W_EthanolRed | rna-NM_001182282.3_EthanolRed | cds-NP_013498.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:879339-880787:+ | gene-YLR394W_FaliES1 | rna-NM_001182282.3_FaliES1 | cds-NP_013498.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000434.1:32496-33944:+ | gene-YLR394W_JAY291 | rna-NM_001182282.3_JAY291 | cds-NP_013498.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:894657-896105:+ | gene-YLR394W_MUCL30387 | rna-NM_001182282.3_MUCL30387 | cds-NP_013498.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:900743-902191:+ | gene-YLR394W_MUCL30388 | rna-NM_001182282.3_MUCL30388 | cds-NP_013498.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:894302-895750:+ | gene-YLR394W_MUCL39482 | rna-NM_001182282.3_MUCL39482 | cds-NP_013498.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:888958-890406:+ | gene-YLR394W_MUCL42920 | rna-NM_001182282.3_MUCL42920 | cds-NP_013498.3_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:907924-909372:+ | gene-YLR394W_NCIM3186 | rna-NM_001182282.3_NCIM3186 | cds-NP_013498.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:903482-904930:+ | gene-YLR394W_NCYC1407 | rna-NM_001182282.3_NCYC1407 | cds-NP_013498.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:889876-891324:+ | gene-YLR394W_PE2H3 | rna-NM_001182282.3_PE2H3 | cds-NP_013498.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:889620-891068:+ | gene-YLR394W_PE2H4 | rna-NM_001182282.3_PE2H4 | cds-NP_013498.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:907950-909398:+ | gene-YLR394W_S288C | rna-NM_001182282.3_S288C | cds-NP_013498.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:139290-140738:- | gene-YLR394W_SA1 | rna-NM_001182282.3_SA1 | cds-NP_013498.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:882418-883866:+ | gene-YLR394W_ThermosaccDry | rna-NM_001182282.3_ThermosaccDry | cds-NP_013498.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:894966-896414:+ | gene-YLR394W_VR1 | rna-NM_001182282.3_VR1 | cds-NP_013498.3_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:219134-220582:+ | gene-YLR394W_ZTW1 | rna-NM_001182282.3_ZTW1 | cds-NP_013498.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:867808-869260:+ | gene-YLR394W_Sparadoxus | rna-NM_001182282.3_Sparadoxus | cds-NP_013498.3_Sparadoxus | 87.4 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |