Gene name: CSS3
Reference locus (S288C): YOL159C
Gene biotype: protein_coding
Description: Uncharacterized protein YOL159C; Protein of unknown function, secreted when constitutively expressed; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the cell periphery, SWAT-GFP fusion also localizes to the extracellular region, and mCherry fusion also localizes to the vacuole; deletion mutants are viable and have elevated levels of Ty1 retrotransposition and Ty1 cDNA
Top 10 interactors (score): YML079W (0.895); CSS2 (0.842); YMR317W (0.748); COS3 (0.709); CSS1 (0.695); YBL039W-B (0.651); SGE1 (0.651); YIL089W (0.619); YGR168C (0.619); SEC65 (0.616); YPR195C (0.589); SIS2 (0.57); TPO4 (0.568); YKL065W-A (0.561); SRO7 (0.524); MEO1 (0.487); UTH1 (0.483); ENB1 (0.474); ULI1 (0.45); JHD2 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:5621-6136:- | gene-YOL159C_AKU4011 | rna-NM_001183412.1_AKU4011 | cds-NP_014483.1_AKU4011 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000099.1:5419-5934:- | gene-YOL159C_BG1 | rna-NM_001183412.1_BG1 | cds-NP_014483.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | MBVY01000084.1:1926-2459:+ | gene-YOL159C_Bruggeman | rna-NM_001183412.1_Bruggeman | cds-NP_014483.1_Bruggeman | 95.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:5579-6094:- | gene-YOL159C_CAT1 | rna-NM_001183412.1_CAT1 | cds-NP_014483.1_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:11783-12272:- | gene-YOL159C_CBS1585 | rna-NM_001183412.1_CBS1585 | cds-NP_014483.1_CBS1585 | 88.9 | 94.9 | Verified | 1 | 1 | 0 | False | False | True | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:5590-6105:- | gene-YOL159C_CBS436 | rna-NM_001183412.1_CBS436 | cds-NP_014483.1_CBS436 | 98.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | MBVQ01000083.1:14071-14583:- | gene-YOL159C_CBS6412 | rna-NM_001183412.1_CBS6412 | cds-NP_014483.1_CBS6412 | 93.6 | 99.4 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | MBVP01000069.1:2367-2816:+ | gene-YOL159C_CBS6413 | rna-NM_001183412.1_CBS6413 | cds-NP_014483.1_CBS6413 | 81.5 | 87.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:17180-17695:- | gene-YOL159C_CENPK1137D | rna-NM_001183412.1_CENPK1137D | cds-NP_014483.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:5485-6000:- | gene-YOL159C_EthanolRed | rna-NM_001183412.1_EthanolRed | cds-NP_014483.1_EthanolRed | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:6152-6667:- | gene-YOL159C_FaliES1 | rna-NM_001183412.1_FaliES1 | cds-NP_014483.1_FaliES1 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000284.1:396-911:+ | gene-YOL159C_JAY291 | rna-NM_001183412.1_JAY291 | cds-NP_014483.1_JAY291 | 92.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:10613-11146:- | gene-YOL159C_MUCL30387 | rna-NM_001183412.1_MUCL30387 | cds-NP_014483.1_MUCL30387 | 95.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:10719-11234:- | gene-YOL159C_MUCL30388 | rna-NM_001183412.1_MUCL30388 | cds-NP_014483.1_MUCL30388 | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:5425-5940:- | gene-YOL159C_MUCL39482 | rna-NM_001183412.1_MUCL39482 | cds-NP_014483.1_MUCL39482 | 93.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:20257-20772:- | gene-YOL159C_MUCL42920 | rna-NM_001183412.1_MUCL42920 | cds-NP_014483.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:17170-17685:- | gene-YOL159C_NCIM3186 | rna-NM_001183412.1_NCIM3186 | cds-NP_014483.1_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:11646-12161:- | gene-YOL159C_NCYC1407 | rna-NM_001183412.1_NCYC1407 | cds-NP_014483.1_NCYC1407 | 93.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:7046-7561:- | gene-YOL159C_PE2H3 | rna-NM_001183412.1_PE2H3 | cds-NP_014483.1_PE2H3 | 92.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:8552-9067:- | gene-YOL159C_PE2H4 | rna-NM_001183412.1_PE2H4 | cds-NP_014483.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:17281-17796:- | gene-YOL159C_S288C | rna-NM_001183412.1_S288C | cds-NP_014483.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000124.1:3065-3579:- | gene-YOL159C_SA1 | rna-NM_001183412.1_SA1 | cds-NP_014483.1_SA1 | 99.0 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:5692-6207:- | gene-YOL159C_ThermosaccDry | rna-NM_001183412.1_ThermosaccDry | cds-NP_014483.1_ThermosaccDry | 96.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:5746-6261:- | gene-YOL159C_VR1 | rna-NM_001183412.1_VR1 | cds-NP_014483.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:5454-5969:- | gene-YOL159C_ZTW1 | rna-NM_001183412.1_ZTW1 | cds-NP_014483.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:4995-5510:- | gene-YOL159C_Sparadoxus | rna-NM_001183412.1_Sparadoxus | cds-NP_014483.1_Sparadoxus | 92.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |