Gene name: CSS2
Reference locus (S288C): YFR020W
Gene biotype: protein_coding
Description: Uncharacterized protein YFR020W; Protein of unknown function, secreted when constitutively expressed; SWAT-GFP fusion protein localizes to the endoplasmic reticulum (ER) and extracellular region, while mCherry fusion protein localizes to the ER and vacuole; mRNA identified as translated by ribosome profiling data; CSS2 is a non-essential gene
Top 10 interactors (score): CSS3 (0.842); CSS1 (0.744); YGR168C (0.699); YBL039W-B (0.699); YIL089W (0.699); YKL065W-A (0.617); KEX2 (0.572); MEO1 (0.571); ULI1 (0.527); PXP1 (0.499); DOG1 (0.45); INA17 (0.45)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005300.1:182975-183673:+ | gene-YFR020W_AKU4011 | rna-NM_001270745.1_AKU4011 | cds-NP_001257674.1_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000071.1:77022-77720:- | gene-YFR020W_BG1 | rna-NM_001270745.1_BG1 | cds-NP_001257674.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005508.1:185068-185766:+ | gene-YFR020W_Bruggeman | rna-NM_001270745.1_Bruggeman | cds-NP_001257674.1_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005524.1:188341-189039:+ | gene-YFR020W_CAT1 | rna-NM_001270745.1_CAT1 | cds-NP_001257674.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005364.1:184466-185164:+ | gene-YFR020W_CBS1585 | rna-NM_001270745.1_CBS1585 | cds-NP_001257674.1_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005348.1:157665-158363:+ | gene-YFR020W_CBS436 | rna-NM_001270745.1_CBS436 | cds-NP_001257674.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005332.1:183547-184245:+ | gene-YFR020W_CBS6412 | rna-NM_001270745.1_CBS6412 | cds-NP_001257674.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005316.1:186201-186899:+ | gene-YFR020W_CBS6413 | rna-NM_001270745.1_CBS6413 | cds-NP_001257674.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001527.1:188809-189507:+ | gene-YFR020W_CENPK1137D | rna-NM_001270745.1_CENPK1137D | cds-NP_001257674.1_CENPK1137D | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005476.1:182083-182781:+ | gene-YFR020W_EthanolRed | rna-NM_001270745.1_EthanolRed | cds-NP_001257674.1_EthanolRed | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005540.1:183732-184430:+ | gene-YFR020W_FaliES1 | rna-NM_001270745.1_FaliES1 | cds-NP_001257674.1_FaliES1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000452.1:30459-31157:+ | gene-YFR020W_JAY291 | rna-NM_001270745.1_JAY291 | cds-NP_001257674.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005412.1:186294-186992:+ | gene-YFR020W_MUCL30387 | rna-NM_001270745.1_MUCL30387 | cds-NP_001257674.1_MUCL30387 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005444.1:182551-183249:+ | gene-YFR020W_MUCL30388 | rna-NM_001270745.1_MUCL30388 | cds-NP_001257674.1_MUCL30388 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005284.1:182384-183082:+ | gene-YFR020W_MUCL39482 | rna-NM_001270745.1_MUCL39482 | cds-NP_001257674.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005428.1:181696-182394:+ | gene-YFR020W_MUCL42920 | rna-NM_001270745.1_MUCL42920 | cds-NP_001257674.1_MUCL42920 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011815.1:192736-193434:+ | gene-YFR020W_NCIM3186 | rna-NM_001270745.1_NCIM3186 | cds-NP_001257674.1_NCIM3186 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005268.1:183266-183964:+ | gene-YFR020W_NCYC1407 | rna-NM_001270745.1_NCYC1407 | cds-NP_001257674.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994145.1:225672-226370:+ | gene-YFR020W_PE2H3 | rna-NM_001270745.1_PE2H3 | cds-NP_001257674.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999877.1:225220-225918:+ | gene-YFR020W_PE2H4 | rna-NM_001270745.1_PE2H4 | cds-NP_001257674.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001138.5:192737-193435:+ | gene-YFR020W_S288C | rna-NM_001270745.1_S288C | cds-NP_001257674.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000011.1:130972-131670:- | gene-YFR020W_SA1 | rna-NM_001270745.1_SA1 | cds-NP_001257674.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005492.1:182890-183588:+ | gene-YFR020W_ThermosaccDry | rna-NM_001270745.1_ThermosaccDry | cds-NP_001257674.1_ThermosaccDry | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005460.1:198903-199601:+ | gene-YFR020W_VR1 | rna-NM_001270745.1_VR1 | cds-NP_001257674.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000013.1:113364-114062:+ | gene-YFR020W_ZTW1 | rna-NM_001270745.1_ZTW1 | cds-NP_001257674.1_ZTW1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |