Gene name: CSS1
Reference locus (S288C): YIL169C
Gene biotype: protein_coding
Description: Putative uncharacterized protein YIL169C; Protein of unknown function, secreted when constitutively expressed; SWAT-GFP, seamless-GFP and mCherry fusion proteins localize to the cell periphery, SWAT-GFP fusion also localizes to the extracellular region, and mCherry fusion also localizes to the vacuole; S/T rich and highly similar to YOL155C, a putative glucan alpha-1,4-glucosidase; transcript is induced in both high and low pH environments; non-essential gene
Top 10 interactors (score): HPF1 (0.908); YBL005W-B (0.892); YAR068W (0.87); YOL160W (0.812); YHR214W-A (0.793); CSS2 (0.744); YKL033W-A (0.73); YEL075W-A (0.71); IMA3 (0.703); YLR157W-E (0.697); CSS3 (0.695); YOL166C (0.693); SOG2 (0.681); ECM34 (0.62); YJL218W (0.619); VTH1 (0.616); YMR317W (0.613); YLR162W (0.573); FLO1 (0.569); PHO81 (0.561)
Homologues (species, bitscore): DST (Danio rerio, 58.5); CG30069 (Drosophila melanogaster, 87.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:23808-27266:- | gene-YIL169C_AKU4011 | rna-NM_001179517.1_AKU4011 | cds-NP_012097.1_AKU4011 | 79.3 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:110073-112507:+ | gene-YIL169C_BG1 | rna-NM_001179517.1_BG1 | cds-NP_012097.1_BG1 | 74.4 | 79.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:26156-28699:- | gene-YIL169C_Bruggeman | rna-NM_001179517.1_Bruggeman | cds-NP_012097.1_Bruggeman | 75.8 | 85.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:21425-23864:- | gene-YIL169C_CAT1 | rna-NM_001179517.1_CAT1 | cds-NP_012097.1_CAT1 | 80.9 | 81.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:23912-27472:- | gene-YIL169C_CBS1585 | rna-NM_001179517.1_CBS1585 | cds-NP_012097.1_CBS1585 | 79.1 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:17260-18657:- | gene-YIL169C_CBS436 | rna-NM_001179517.1_CBS436 | cds-NP_012097.1_CBS436 | 42.7 | 46.6 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:22518-25374:- | gene-YIL169C_CBS6412 | rna-NM_001179517.1_CBS6412 | cds-NP_012097.1_CBS6412 | 80.4 | 87.7 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:16157-19154:- | gene-YIL169C_CBS6413 | rna-NM_001179517.1_CBS6413 | cds-NP_012097.1_CBS6413 | 83.3 | 95.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:14825-17812:- | gene-YIL169C_CENPK1137D | rna-NM_001179517.1_CENPK1137D | cds-NP_012097.1_CENPK1137D | 68.5 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:10324-12798:- | gene-YIL169C_EthanolRed | rna-NM_001179517.1_EthanolRed | cds-NP_012097.1_EthanolRed | 76.2 | 81.7 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:26119-28602:- | gene-YIL169C_FaliES1 | rna-NM_001179517.1_FaliES1 | cds-NP_012097.1_FaliES1 | 77.2 | 82.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:79722-82119:+ | gene-YIL169C_JAY291 | rna-NM_001179517.1_JAY291 | cds-NP_012097.1_JAY291 | 79.5 | 80.2 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:24897-27440:- | gene-YIL169C_MUCL30387 | rna-NM_001179517.1_MUCL30387 | cds-NP_012097.1_MUCL30387 | 77.1 | 85.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:21938-24481:- | gene-YIL169C_MUCL30388 | rna-NM_001179517.1_MUCL30388 | cds-NP_012097.1_MUCL30388 | 77.1 | 85.1 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:24575-28395:- | gene-YIL169C_MUCL39482 | rna-NM_001179517.1_MUCL39482 | cds-NP_012097.1_MUCL39482 | 76.5 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:25460-28558:- | gene-YIL169C_MUCL42920 | rna-NM_001179517.1_MUCL42920 | cds-NP_012097.1_MUCL42920 | 74.1 | 88.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:23119-26106:- | gene-YIL169C_NCIM3186 | rna-NM_001179517.1_NCIM3186 | cds-NP_012097.1_NCIM3186 | 96.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:25594-28747:- | gene-YIL169C_NCYC1407 | rna-NM_001179517.1_NCYC1407 | cds-NP_012097.1_NCYC1407 | 61.5 | 79.1 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:24569-27008:- | gene-YIL169C_PE2H3 | rna-NM_001179517.1_PE2H3 | cds-NP_012097.1_PE2H3 | 80.9 | 81.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:18531-20970:- | gene-YIL169C_PE2H4 | rna-NM_001179517.1_PE2H4 | cds-NP_012097.1_PE2H4 | 80.9 | 81.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:23119-26106:- | gene-YIL169C_S288C | rna-NM_001179517.1_S288C | cds-NP_012097.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:2141-4622:- | gene-YIL169C_SA1 | rna-NM_001179517.1_SA1 | cds-NP_012097.1_SA1 | 79.7 | 82.6 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:24728-27211:- | gene-YIL169C_ThermosaccDry | rna-NM_001179517.1_ThermosaccDry | cds-NP_012097.1_ThermosaccDry | 77.2 | 82.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:21995-24434:- | gene-YIL169C_VR1 | rna-NM_001179517.1_VR1 | cds-NP_012097.1_VR1 | 80.9 | 81.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:2-2211:- | gene-YIL169C_ZTW1 | rna-NM_001179517.1_ZTW1 | cds-NP_012097.1_ZTW1 | 72.9 | 73.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:17380-19819:- | gene-YIL169C_Sparadoxus | rna-NM_001179517.1_Sparadoxus | cds-NP_012097.1_Sparadoxus | 70.1 | 80.9 | Verified | 1 | 1 | 0 | False | False | False | True | False |