Gene name: CSN9
Reference locus (S288C): YDR179C
Gene biotype: protein_coding
Description: Subunit of the Cop9 signalosome; Cop9 signalosome is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling
Top 10 interactors (score): RRI2 (0.998); CSI1 (0.998); PCI8 (0.998); RRI1 (0.997); RPN5 (0.996); YJR084W (0.929); THP3 (0.744); PRE9 (0.67); SEM1 (0.66); RPN3 (0.619); RPN7 (0.617); CLU1 (0.571); RPN12 (0.565); CDC53 (0.554); RUB1 (0.526); RPN10 (0.523); RPN11 (0.497); SKP1 (0.495); PUP3 (0.489); PRE8 (0.489)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:787235-787723:- | gene-YDR179C_AKU4011 | rna-NM_001180486.1_AKU4011 | cds-NP_010464.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:338075-338563:+ | gene-YDR179C_BG1 | rna-NM_001180486.1_BG1 | cds-NP_010464.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:819657-820145:- | gene-YDR179C_Bruggeman | rna-NM_001180486.1_Bruggeman | cds-NP_010464.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:806902-807390:- | gene-YDR179C_CAT1 | rna-NM_001180486.1_CAT1 | cds-NP_010464.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:777602-778090:- | gene-YDR179C_CBS1585 | rna-NM_001180486.1_CBS1585 | cds-NP_010464.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:806584-807072:- | gene-YDR179C_CBS436 | rna-NM_001180486.1_CBS436 | cds-NP_010464.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:774407-774895:- | gene-YDR179C_CBS6412 | rna-NM_001180486.1_CBS6412 | cds-NP_010464.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:804950-805438:- | gene-YDR179C_CBS6413 | rna-NM_001180486.1_CBS6413 | cds-NP_010464.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:817514-818002:- | gene-YDR179C_CENPK1137D | rna-NM_001180486.1_CENPK1137D | cds-NP_010464.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:788003-788491:- | gene-YDR179C_EthanolRed | rna-NM_001180486.1_EthanolRed | cds-NP_010464.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:796215-796703:- | gene-YDR179C_FaliES1 | rna-NM_001180486.1_FaliES1 | cds-NP_010464.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000068.1:52661-53149:+ | gene-YDR179C_JAY291 | rna-NM_001180486.1_JAY291 | cds-NP_010464.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:805303-805791:- | gene-YDR179C_MUCL30387 | rna-NM_001180486.1_MUCL30387 | cds-NP_010464.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:793545-794033:- | gene-YDR179C_MUCL30388 | rna-NM_001180486.1_MUCL30388 | cds-NP_010464.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:779049-779537:- | gene-YDR179C_MUCL39482 | rna-NM_001180486.1_MUCL39482 | cds-NP_010464.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:717747-718235:- | gene-YDR179C_MUCL42920 | rna-NM_001180486.1_MUCL42920 | cds-NP_010464.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:818631-819119:- | gene-YDR179C_NCIM3186 | rna-NM_001180486.1_NCIM3186 | cds-NP_010464.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:782182-782670:- | gene-YDR179C_NCYC1407 | rna-NM_001180486.1_NCYC1407 | cds-NP_010464.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:798908-799396:- | gene-YDR179C_PE2H3 | rna-NM_001180486.1_PE2H3 | cds-NP_010464.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:798213-798701:- | gene-YDR179C_PE2H4 | rna-NM_001180486.1_PE2H4 | cds-NP_010464.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:818708-819196:- | gene-YDR179C_S288C | rna-NM_001180486.1_S288C | cds-NP_010464.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000009.1:164419-164907:- | gene-YDR179C_SA1 | rna-NM_001180486.1_SA1 | cds-NP_010464.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:794370-794858:- | gene-YDR179C_ThermosaccDry | rna-NM_001180486.1_ThermosaccDry | cds-NP_010464.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:809597-810085:- | gene-YDR179C_VR1 | rna-NM_001180486.1_VR1 | cds-NP_010464.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:57081-57569:- | gene-YDR179C_ZTW1 | rna-NM_001180486.1_ZTW1 | cds-NP_010464.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:799506-799994:- | gene-YDR179C_Sparadoxus | rna-NM_001180486.1_Sparadoxus | cds-NP_010464.1_Sparadoxus | 88.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |