Gene name: CSM4
Reference locus (S288C): YPL200W
Gene biotype: protein_coding
Description: Protein required for accurate chromosome segregation during meiosis; involved in meiotic telomere clustering (bouquet formation) and telomere-led rapid prophase movements; functions with meiosis-specific telomere-binding protein Ndj1p; CSM4 has a paralog, MPS2, that arose from the whole genome duplication
Top 10 interactors (score): NDJ1 (0.979); MPS3 (0.93); ISW2 (0.85); MPS2 (0.791); SPO11 (0.788); CAT8 (0.78); ADR1 (0.78); MSH4 (0.755); RED1 (0.68); FMP32 (0.647); MSH5 (0.644); YDR510C-A (0.617); YDL241W (0.61); RAD17 (0.592); YLR173W (0.574); ACT1 (0.572); ZIP1 (0.572); HOP2 (0.568); MSC6 (0.526); SPS22 (0.489)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:149335-149805:+ | gene-YPL200W_AKU4011 | rna-NM_001184014.1_AKU4011 | cds-NP_015124.1_AKU4011 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:355123-355593:+ | gene-YPL200W_BG1 | rna-NM_001184014.1_BG1 | cds-NP_015124.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:174821-175291:+ | gene-YPL200W_Bruggeman | rna-NM_001184014.1_Bruggeman | cds-NP_015124.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:171425-171895:+ | gene-YPL200W_CAT1 | rna-NM_001184014.1_CAT1 | cds-NP_015124.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:153522-153992:+ | gene-YPL200W_CBS1585 | rna-NM_001184014.1_CBS1585 | cds-NP_015124.1_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:167965-168435:+ | gene-YPL200W_CBS436 | rna-NM_001184014.1_CBS436 | cds-NP_015124.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:158324-158794:+ | gene-YPL200W_CBS6412 | rna-NM_001184014.1_CBS6412 | cds-NP_015124.1_CBS6412 | 98.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:149696-150166:+ | gene-YPL200W_CBS6413 | rna-NM_001184014.1_CBS6413 | cds-NP_015124.1_CBS6413 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:171431-171901:+ | gene-YPL200W_CENPK1137D | rna-NM_001184014.1_CENPK1137D | cds-NP_015124.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:148454-148924:+ | gene-YPL200W_EthanolRed | rna-NM_001184014.1_EthanolRed | cds-NP_015124.1_EthanolRed | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:155660-156130:+ | gene-YPL200W_FaliES1 | rna-NM_001184014.1_FaliES1 | cds-NP_015124.1_FaliES1 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000069.1:2174-2644:- | gene-YPL200W_JAY291 | rna-NM_001184014.1_JAY291 | cds-NP_015124.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:166533-167003:+ | gene-YPL200W_MUCL30387 | rna-NM_001184014.1_MUCL30387 | cds-NP_015124.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:164701-165171:+ | gene-YPL200W_MUCL30388 | rna-NM_001184014.1_MUCL30388 | cds-NP_015124.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:146652-147122:+ | gene-YPL200W_MUCL39482 | rna-NM_001184014.1_MUCL39482 | cds-NP_015124.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:165555-166025:+ | gene-YPL200W_MUCL42920 | rna-NM_001184014.1_MUCL42920 | cds-NP_015124.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:171467-171937:+ | gene-YPL200W_NCIM3186 | rna-NM_001184014.1_NCIM3186 | cds-NP_015124.1_NCIM3186 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:153100-153570:+ | gene-YPL200W_NCYC1407 | rna-NM_001184014.1_NCYC1407 | cds-NP_015124.1_NCYC1407 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:160835-161305:+ | gene-YPL200W_PE2H3 | rna-NM_001184014.1_PE2H3 | cds-NP_015124.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:160478-160948:+ | gene-YPL200W_PE2H4 | rna-NM_001184014.1_PE2H4 | cds-NP_015124.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:171484-171954:+ | gene-YPL200W_S288C | rna-NM_001184014.1_S288C | cds-NP_015124.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000095.1:2231-2701:- | gene-YPL200W_SA1 | rna-NM_001184014.1_SA1 | cds-NP_015124.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:155441-155911:+ | gene-YPL200W_ThermosaccDry | rna-NM_001184014.1_ThermosaccDry | cds-NP_015124.1_ThermosaccDry | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:170365-170835:+ | gene-YPL200W_VR1 | rna-NM_001184014.1_VR1 | cds-NP_015124.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:154959-155429:+ | gene-YPL200W_ZTW1 | rna-NM_001184014.1_ZTW1 | cds-NP_015124.1_ZTW1 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:156503-156973:+ | gene-YPL200W_Sparadoxus | rna-NM_001184014.1_Sparadoxus | cds-NP_015124.1_Sparadoxus | 82.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |