Gene name: CSM3
Reference locus (S288C): YMR048W
Gene biotype: protein_coding
Description: Chromosome segregation in meiosis protein 3; Replication fork associated factor; required for stable replication fork pausing; component of the DNA replication checkpoint pathway; required for accurate chromosome segregation during meiosis; forms nuclear foci upon DNA replication stress
Top 10 interactors (score): SLD5 (0.999); CTF4 (0.999); MCM3 (0.999); TOF1 (0.999); PSF1 (0.999); MCM5 (0.999); PSF3 (0.999); MCM6 (0.999); MCM2 (0.999); CDC45 (0.999); MCM7 (0.999); MRC1 (0.999); MCM4 (0.999); MCM10 (0.998); RFC5 (0.994); PSF2 (0.993); RFA2 (0.992); CHK1 (0.991); SGS1 (0.991); DCC1 (0.991)
Homologues (species, bitscore): TIPIN (Homo sapiens, 54.7); Tipin (Mus musculus, 53.5); tipin (Danio rerio, 53.1); tipin (Xenopus tropicalis, 53.5); AT3G02820 (Arabidopsis thaliana, 50.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:410653-411597:+ | gene-YMR048W_AKU4011 | rna-NM_001182545.1_AKU4011 | cds-NP_013763.1_AKU4011 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:131172-132125:- | gene-YMR048W_BG1 | rna-NM_001182545.1_BG1 | cds-NP_013763.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:350605-351558:+ | gene-YMR048W_Bruggeman | rna-NM_001182545.1_Bruggeman | cds-NP_013763.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:353140-354093:+ | gene-YMR048W_CAT1 | rna-NM_001182545.1_CAT1 | cds-NP_013763.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:343595-344539:+ | gene-YMR048W_CBS1585 | rna-NM_001182545.1_CBS1585 | cds-NP_013763.1_CBS1585 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:349150-350103:+ | gene-YMR048W_CBS436 | rna-NM_001182545.1_CBS436 | cds-NP_013763.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:456996-457940:+ | gene-YMR048W_CBS6412 | rna-NM_001182545.1_CBS6412 | cds-NP_013763.1_CBS6412 | 97.9 | 99.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:342850-343794:+ | gene-YMR048W_CBS6413 | rna-NM_001182545.1_CBS6413 | cds-NP_013763.1_CBS6413 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:355791-356735:+ | gene-YMR048W_CENPK1137D | rna-NM_001182545.1_CENPK1137D | cds-NP_013763.1_CENPK1137D | 98.0 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:343429-344382:+ | gene-YMR048W_EthanolRed | rna-NM_001182545.1_EthanolRed | cds-NP_013763.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:346608-347552:+ | gene-YMR048W_FaliES1 | rna-NM_001182545.1_FaliES1 | cds-NP_013763.1_FaliES1 | 98.5 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:89382-90335:- | gene-YMR048W_JAY291 | rna-NM_001182545.1_JAY291 | cds-NP_013763.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:348564-349517:+ | gene-YMR048W_MUCL30387 | rna-NM_001182545.1_MUCL30387 | cds-NP_013763.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:353219-354172:+ | gene-YMR048W_MUCL30388 | rna-NM_001182545.1_MUCL30388 | cds-NP_013763.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:343883-344827:+ | gene-YMR048W_MUCL39482 | rna-NM_001182545.1_MUCL39482 | cds-NP_013763.1_MUCL39482 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:349707-350660:+ | gene-YMR048W_MUCL42920 | rna-NM_001182545.1_MUCL42920 | cds-NP_013763.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:366935-367888:+ | gene-YMR048W_NCIM3186 | rna-NM_001182545.1_NCIM3186 | cds-NP_013763.1_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:343794-344738:+ | gene-YMR048W_NCYC1407 | rna-NM_001182545.1_NCYC1407 | cds-NP_013763.1_NCYC1407 | 97.9 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:349740-350693:+ | gene-YMR048W_PE2H3 | rna-NM_001182545.1_PE2H3 | cds-NP_013763.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:355835-356788:+ | gene-YMR048W_PE2H4 | rna-NM_001182545.1_PE2H4 | cds-NP_013763.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:366981-367934:+ | gene-YMR048W_S288C | rna-NM_001182545.1_S288C | cds-NP_013763.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:176245-177198:- | gene-YMR048W_SA1 | rna-NM_001182545.1_SA1 | cds-NP_013763.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:343680-344633:+ | gene-YMR048W_ThermosaccDry | rna-NM_001182545.1_ThermosaccDry | cds-NP_013763.1_ThermosaccDry | 98.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:348397-349350:+ | gene-YMR048W_VR1 | rna-NM_001182545.1_VR1 | cds-NP_013763.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:322697-323650:+ | gene-YMR048W_ZTW1 | rna-NM_001182545.1_ZTW1 | cds-NP_013763.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:356921-357877:+ | gene-YMR048W_Sparadoxus | rna-NM_001182545.1_Sparadoxus | cds-NP_013763.1_Sparadoxus | 85.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |