Gene name: CSM2
Reference locus (S288C): YIL132C
Gene biotype: protein_coding
Description: Chromosome segregation in meiosis protein 2; Component of Shu complex (aka PCSS complex); Shu complex also includes Psy3, Shu1, Shu2, and promotes error-free DNA repair,; Shu complex mediates inhibition of Srs2p function; promotes formation of Rad51p filaments; Psy3p and Csm2p contain similar DNA-binding regions which work together to form a single DNA binding site; required for accurate chromosome segregation during meiosis
Top 10 interactors (score): PSY3 (0.999); SHU2 (0.999); SHU1 (0.999); RAD55 (0.957); RAD51 (0.946); RAD2 (0.928); RAD4 (0.912); SGS1 (0.907); RAD3 (0.9); TFB1 (0.9); SSL2 (0.9); ABF1 (0.9); RAD23 (0.9); SSL1 (0.9); RAD16 (0.9); RAD7 (0.9); RAD57 (0.893); MPH1 (0.834); RAD52 (0.826); SRS2 (0.819)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:101076-101717:- | gene-YIL132C_AKU4011 | rna-NM_001179480.1_AKU4011 | cds-NP_012134.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000174.1:35644-36285:+ | gene-YIL132C_BG1 | rna-NM_001179480.1_BG1 | cds-NP_012134.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:103835-104476:- | gene-YIL132C_Bruggeman | rna-NM_001179480.1_Bruggeman | cds-NP_012134.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:97647-98288:- | gene-YIL132C_CAT1 | rna-NM_001179480.1_CAT1 | cds-NP_012134.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:101278-101919:- | gene-YIL132C_CBS1585 | rna-NM_001179480.1_CBS1585 | cds-NP_012134.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:92419-93060:- | gene-YIL132C_CBS436 | rna-NM_001179480.1_CBS436 | cds-NP_012134.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:98808-99449:- | gene-YIL132C_CBS6412 | rna-NM_001179480.1_CBS6412 | cds-NP_012134.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:92964-93605:- | gene-YIL132C_CBS6413 | rna-NM_001179480.1_CBS6413 | cds-NP_012134.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:91567-92208:- | gene-YIL132C_CENPK1137D | rna-NM_001179480.1_CENPK1137D | cds-NP_012134.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:86612-87253:- | gene-YIL132C_EthanolRed | rna-NM_001179480.1_EthanolRed | cds-NP_012134.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:102415-103056:- | gene-YIL132C_FaliES1 | rna-NM_001179480.1_FaliES1 | cds-NP_012134.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000319.1:5296-5937:+ | gene-YIL132C_JAY291 | rna-NM_001179480.1_JAY291 | cds-NP_012134.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:101594-102235:- | gene-YIL132C_MUCL30387 | rna-NM_001179480.1_MUCL30387 | cds-NP_012134.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:101275-101916:- | gene-YIL132C_MUCL30388 | rna-NM_001179480.1_MUCL30388 | cds-NP_012134.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:102206-102847:- | gene-YIL132C_MUCL39482 | rna-NM_001179480.1_MUCL39482 | cds-NP_012134.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:105406-106047:- | gene-YIL132C_MUCL42920 | rna-NM_001179480.1_MUCL42920 | cds-NP_012134.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:99860-100501:- | gene-YIL132C_NCIM3186 | rna-NM_001179480.1_NCIM3186 | cds-NP_012134.1_NCIM3186 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:106170-106811:- | gene-YIL132C_NCYC1407 | rna-NM_001179480.1_NCYC1407 | cds-NP_012134.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:100795-101436:- | gene-YIL132C_PE2H3 | rna-NM_001179480.1_PE2H3 | cds-NP_012134.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:94757-95398:- | gene-YIL132C_PE2H4 | rna-NM_001179480.1_PE2H4 | cds-NP_012134.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:99860-100501:- | gene-YIL132C_S288C | rna-NM_001179480.1_S288C | cds-NP_012134.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000050.1:78435-79076:- | gene-YIL132C_SA1 | rna-NM_001179480.1_SA1 | cds-NP_012134.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:101025-101666:- | gene-YIL132C_ThermosaccDry | rna-NM_001179480.1_ThermosaccDry | cds-NP_012134.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:98184-98825:- | gene-YIL132C_VR1 | rna-NM_001179480.1_VR1 | cds-NP_012134.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:76006-76647:- | gene-YIL132C_ZTW1 | rna-NM_001179480.1_ZTW1 | cds-NP_012134.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:93864-94499:- | gene-YIL132C_Sparadoxus | rna-NM_001179480.1_Sparadoxus | cds-NP_012134.1_Sparadoxus | 90.0 | 99.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |