Gene name: CSM1
Reference locus (S288C): YCR086W
Gene biotype: protein_coding
Description: Monopolin complex subunit CSM1; Nucleolar protein that mediates homolog segregation during meiosis I; forms a complex with Lrs4p and then Mam1p at kinetochores; required for condensin recruitment to the replication fork barrier site and rDNA repeat segregation
Top 10 interactors (score): MAM1 (0.999); LRS4 (0.999); HRR25 (0.987); DSE3 (0.982); ULP2 (0.98); TOF2 (0.967); DSN1 (0.941); NUR1 (0.928); CDC14 (0.89); FOB1 (0.857); SRC1 (0.838); MTW1 (0.787); SIR2 (0.785); CTF19 (0.756); NSL1 (0.75); NNF1 (0.727); PLP2 (0.702); NOP53 (0.676); SMC2 (0.671); GIC1 (0.668)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:257895-258467:+ | gene-YCR086W_AKU4011 | rna-NM_001178792.1_AKU4011 | cds-NP_010009.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:116649-117221:+ | gene-YCR086W_BG1 | rna-NM_001178792.1_BG1 | cds-NP_010009.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:254101-254673:+ | gene-YCR086W_Bruggeman | rna-NM_001178792.1_Bruggeman | cds-NP_010009.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:265154-265726:+ | gene-YCR086W_CAT1 | rna-NM_001178792.1_CAT1 | cds-NP_010009.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:252710-253282:+ | gene-YCR086W_CBS1585 | rna-NM_001178792.1_CBS1585 | cds-NP_010009.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:264486-265058:+ | gene-YCR086W_CBS436 | rna-NM_001178792.1_CBS436 | cds-NP_010009.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:244062-244634:+ | gene-YCR086W_CBS6412 | rna-NM_001178792.1_CBS6412 | cds-NP_010009.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:258760-259332:+ | gene-YCR086W_CBS6413 | rna-NM_001178792.1_CBS6413 | cds-NP_010009.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:262775-263347:+ | gene-YCR086W_CENPK1137D | rna-NM_001178792.1_CENPK1137D | cds-NP_010009.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:253710-254282:+ | gene-YCR086W_EthanolRed | rna-NM_001178792.1_EthanolRed | cds-NP_010009.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:259073-259645:+ | gene-YCR086W_FaliES1 | rna-NM_001178792.1_FaliES1 | cds-NP_010009.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000323.1:29146-29718:- | gene-YCR086W_JAY291 | rna-NM_001178792.1_JAY291 | cds-NP_010009.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:251229-251801:+ | gene-YCR086W_MUCL30387 | rna-NM_001178792.1_MUCL30387 | cds-NP_010009.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:251096-251668:+ | gene-YCR086W_MUCL30388 | rna-NM_001178792.1_MUCL30388 | cds-NP_010009.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:259274-259846:+ | gene-YCR086W_MUCL39482 | rna-NM_001178792.1_MUCL39482 | cds-NP_010009.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:255679-256251:+ | gene-YCR086W_MUCL42920 | rna-NM_001178792.1_MUCL42920 | cds-NP_010009.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:263024-263596:+ | gene-YCR086W_NCIM3186 | rna-NM_001178792.1_NCIM3186 | cds-NP_010009.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:260113-260685:+ | gene-YCR086W_NCYC1407 | rna-NM_001178792.1_NCYC1407 | cds-NP_010009.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:274667-275239:+ | gene-YCR086W_PE2H3 | rna-NM_001178792.1_PE2H3 | cds-NP_010009.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:263219-263791:+ | gene-YCR086W_PE2H4 | rna-NM_001178792.1_PE2H4 | cds-NP_010009.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:263392-263964:+ | gene-YCR086W_S288C | rna-NM_001178792.1_S288C | cds-NP_010009.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:63239-63811:+ | gene-YCR086W_SA1 | rna-NM_001178792.1_SA1 | cds-NP_010009.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:259000-259572:+ | gene-YCR086W_ThermosaccDry | rna-NM_001178792.1_ThermosaccDry | cds-NP_010009.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:270208-270780:+ | gene-YCR086W_VR1 | rna-NM_001178792.1_VR1 | cds-NP_010009.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:256853-257425:+ | gene-YCR086W_ZTW1 | rna-NM_001178792.1_ZTW1 | cds-NP_010009.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:290983-291555:+ | gene-YCR086W_Sparadoxus | rna-NM_001178792.1_Sparadoxus | cds-NP_010009.1_Sparadoxus | 92.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |