Gene name: CSI1
Reference locus (S288C): YMR025W
Gene biotype: protein_coding
Description: Cop9 signalosome-interactor 1; Subunit of the Cop9 signalosome; which is required for deneddylation, or removal of the ubiquitin-like protein Rub1p from Cdc53p (cullin); involved in adaptation to pheromone signaling; functional equivalent of canonical Csn6 subunit of the COP9 signalosome
Top 10 interactors (score): CSN9 (0.998); RRI1 (0.997); RRI2 (0.997); PCI8 (0.997); RPN5 (0.995); YJR084W (0.914); CSI2 (0.766); RUB1 (0.724); SST2 (0.647); YET1 (0.517); CDC53 (0.482); ATG17 (0.481); RPN11 (0.434); RPN8 (0.402)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:372897-373784:+ | gene-YMR025W_AKU4011 | rna-NM_001182521.1_AKU4011 | cds-NP_013738.1_AKU4011 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:169069-169956:- | gene-YMR025W_BG1 | rna-NM_001182521.1_BG1 | cds-NP_013738.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:312838-313725:+ | gene-YMR025W_Bruggeman | rna-NM_001182521.1_Bruggeman | cds-NP_013738.1_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:315350-316237:+ | gene-YMR025W_CAT1 | rna-NM_001182521.1_CAT1 | cds-NP_013738.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:305836-306723:+ | gene-YMR025W_CBS1585 | rna-NM_001182521.1_CBS1585 | cds-NP_013738.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:311389-312276:+ | gene-YMR025W_CBS436 | rna-NM_001182521.1_CBS436 | cds-NP_013738.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:419240-420127:+ | gene-YMR025W_CBS6412 | rna-NM_001182521.1_CBS6412 | cds-NP_013738.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:305094-305981:+ | gene-YMR025W_CBS6413 | rna-NM_001182521.1_CBS6413 | cds-NP_013738.1_CBS6413 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:318029-318916:+ | gene-YMR025W_CENPK1137D | rna-NM_001182521.1_CENPK1137D | cds-NP_013738.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:305669-306556:+ | gene-YMR025W_EthanolRed | rna-NM_001182521.1_EthanolRed | cds-NP_013738.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:308852-309739:+ | gene-YMR025W_FaliES1 | rna-NM_001182521.1_FaliES1 | cds-NP_013738.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:127200-128087:- | gene-YMR025W_JAY291 | rna-NM_001182521.1_JAY291 | cds-NP_013738.1_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:310797-311684:+ | gene-YMR025W_MUCL30387 | rna-NM_001182521.1_MUCL30387 | cds-NP_013738.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:315221-316108:+ | gene-YMR025W_MUCL30388 | rna-NM_001182521.1_MUCL30388 | cds-NP_013738.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:306121-307008:+ | gene-YMR025W_MUCL39482 | rna-NM_001182521.1_MUCL39482 | cds-NP_013738.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:311939-312826:+ | gene-YMR025W_MUCL42920 | rna-NM_001182521.1_MUCL42920 | cds-NP_013738.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:323254-324141:+ | gene-YMR025W_NCIM3186 | rna-NM_001182521.1_NCIM3186 | cds-NP_013738.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:306038-306925:+ | gene-YMR025W_NCYC1407 | rna-NM_001182521.1_NCYC1407 | cds-NP_013738.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:311985-312872:+ | gene-YMR025W_PE2H3 | rna-NM_001182521.1_PE2H3 | cds-NP_013738.1_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:318080-318967:+ | gene-YMR025W_PE2H4 | rna-NM_001182521.1_PE2H4 | cds-NP_013738.1_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:323300-324187:+ | gene-YMR025W_S288C | rna-NM_001182521.1_S288C | cds-NP_013738.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:214077-214964:- | gene-YMR025W_SA1 | rna-NM_001182521.1_SA1 | cds-NP_013738.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:305921-306808:+ | gene-YMR025W_ThermosaccDry | rna-NM_001182521.1_ThermosaccDry | cds-NP_013738.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:310620-311507:+ | gene-YMR025W_VR1 | rna-NM_001182521.1_VR1 | cds-NP_013738.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:284936-285823:+ | gene-YMR025W_ZTW1 | rna-NM_001182521.1_ZTW1 | cds-NP_013738.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:318862-319749:+ | gene-YMR025W_Sparadoxus | rna-NM_001182521.1_Sparadoxus | cds-NP_013738.1_Sparadoxus | 84.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |