Gene name: CSH1
Reference locus (S288C): YBR161W
Gene biotype: protein_coding
Description: Mannosylinositol phosphorylceramide (MIPC) synthase catalytic subunit; forms a complex with regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Sur1p; CSH1 has a paralog, SUR1, that arose from the whole genome duplication
Top 10 interactors (score): SUR1 (0.982); AUR1 (0.967); IPT1 (0.965); KEI1 (0.96); CSG2 (0.805); MNN9 (0.674); PIP2 (0.67); MIT1 (0.647); SLM2 (0.616); OAF1 (0.611); LCB5 (0.611); TOS1 (0.599); KTR4 (0.595); RMA1 (0.565); TSC3 (0.525); CAB5 (0.525); LCB1 (0.523); KTR6 (0.52); GAS1 (0.515); HOR7 (0.514)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:544508-545638:+ | gene-YBR161W_AKU4011 | rna-NM_001178509.3_AKU4011 | cds-NP_009719.3_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:535048-536178:+ | gene-YBR161W_BG1 | rna-NM_001178509.3_BG1 | cds-NP_009719.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:547528-548658:+ | gene-YBR161W_Bruggeman | rna-NM_001178509.3_Bruggeman | cds-NP_009719.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:441646-442776:+ | gene-YBR161W_CAT1 | rna-NM_001178509.3_CAT1 | cds-NP_009719.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:536291-537421:+ | gene-YBR161W_CBS1585 | rna-NM_001178509.3_CBS1585 | cds-NP_009719.3_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:544373-545503:+ | gene-YBR161W_CBS436 | rna-NM_001178509.3_CBS436 | cds-NP_009719.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:633775-634905:+ | gene-YBR161W_CBS6412 | rna-NM_001178509.3_CBS6412 | cds-NP_009719.3_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:541846-542976:+ | gene-YBR161W_CBS6413 | rna-NM_001178509.3_CBS6413 | cds-NP_009719.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:555404-556534:+ | gene-YBR161W_CENPK1137D | rna-NM_001178509.3_CENPK1137D | cds-NP_009719.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:670355-671485:+ | gene-YBR161W_EthanolRed | rna-NM_001178509.3_EthanolRed | cds-NP_009719.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:560585-561715:+ | gene-YBR161W_FaliES1 | rna-NM_001178509.3_FaliES1 | cds-NP_009719.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000310.1:413-1543:+ | gene-YBR161W_JAY291 | rna-NM_001178509.3_JAY291 | cds-NP_009719.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:549180-550310:+ | gene-YBR161W_MUCL30387 | rna-NM_001178509.3_MUCL30387 | cds-NP_009719.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:548470-549600:+ | gene-YBR161W_MUCL30388 | rna-NM_001178509.3_MUCL30388 | cds-NP_009719.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:534664-535794:+ | gene-YBR161W_MUCL39482 | rna-NM_001178509.3_MUCL39482 | cds-NP_009719.3_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:544585-545715:+ | gene-YBR161W_MUCL42920 | rna-NM_001178509.3_MUCL42920 | cds-NP_009719.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:561431-562561:+ | gene-YBR161W_NCIM3186 | rna-NM_001178509.3_NCIM3186 | cds-NP_009719.3_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:537231-538361:+ | gene-YBR161W_NCYC1407 | rna-NM_001178509.3_NCYC1407 | cds-NP_009719.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:549887-551017:+ | gene-YBR161W_PE2H3 | rna-NM_001178509.3_PE2H3 | cds-NP_009719.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:547563-548693:+ | gene-YBR161W_PE2H4 | rna-NM_001178509.3_PE2H4 | cds-NP_009719.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:561634-562764:+ | gene-YBR161W_S288C | rna-NM_001178509.3_S288C | cds-NP_009719.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000032.1:82831-83961:+ | gene-YBR161W_SA1 | rna-NM_001178509.3_SA1 | cds-NP_009719.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:559596-560726:+ | gene-YBR161W_ThermosaccDry | rna-NM_001178509.3_ThermosaccDry | cds-NP_009719.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:541042-542172:+ | gene-YBR161W_VR1 | rna-NM_001178509.3_VR1 | cds-NP_009719.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:534710-535840:+ | gene-YBR161W_ZTW1 | rna-NM_001178509.3_ZTW1 | cds-NP_009719.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:571953-573080:+ | gene-YBR161W_Sparadoxus | rna-NM_001178509.3_Sparadoxus | cds-NP_009719.3_Sparadoxus | 91.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |