Gene name: CSF1
Reference locus (S288C): YLR087C
Gene biotype: protein_coding
Description: Protein required for fermentation at low temperature; plays a role in the maturation of secretory proteins; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies
Top 10 interactors (score): TRA1 (0.843); HSP82 (0.841); HSC82 (0.84); TOM1 (0.801); MTC2 (0.76); DLT1 (0.75); MAY24 (0.747); MTC4 (0.732); CYR1 (0.686); FMT1 (0.674); EAF7 (0.674); RRP45 (0.611); GUP1 (0.604); GYP6 (0.595); MTC5 (0.594); EAF5 (0.589); BRE1 (0.587); ARH1 (0.584); YEL025C (0.572); TOP1 (0.559)
Homologues (species, bitscore): KIAA1109 (Homo sapiens, 91.3); Kiaa1109 (Mus musculus, 89.7); ENSDARP00000120522 (Danio rerio, 86.3); kiaa1109 (Xenopus tropicalis, 51.6); tweek (Drosophila melanogaster, 105.1); Lpd-3 (Caenorhabditis elegans, 79.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:289327-298203:- | gene-YLR087C_AKU4011 | rna-NM_001181974.1_AKU4011 | cds-NP_013188.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:252497-261373:- | gene-YLR087C_BG1 | rna-NM_001181974.1_BG1 | cds-NP_013188.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:299235-308111:- | gene-YLR087C_Bruggeman | rna-NM_001181974.1_Bruggeman | cds-NP_013188.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:299554-308430:- | gene-YLR087C_CAT1 | rna-NM_001181974.1_CAT1 | cds-NP_013188.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:296441-305317:- | gene-YLR087C_CBS1585 | rna-NM_001181974.1_CBS1585 | cds-NP_013188.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:287062-295938:- | gene-YLR087C_CBS436 | rna-NM_001181974.1_CBS436 | cds-NP_013188.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:294882-303758:- | gene-YLR087C_CBS6412 | rna-NM_001181974.1_CBS6412 | cds-NP_013188.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:296713-305589:- | gene-YLR087C_CBS6413 | rna-NM_001181974.1_CBS6413 | cds-NP_013188.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:291862-300738:- | gene-YLR087C_CENPK1137D | rna-NM_001181974.1_CENPK1137D | cds-NP_013188.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:288846-297722:- | gene-YLR087C_EthanolRed | rna-NM_001181974.1_EthanolRed | cds-NP_013188.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:288722-297598:- | gene-YLR087C_FaliES1 | rna-NM_001181974.1_FaliES1 | cds-NP_013188.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:63659-72535:- | gene-YLR087C_JAY291 | rna-NM_001181974.1_JAY291 | cds-NP_013188.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:296597-305473:- | gene-YLR087C_MUCL30387 | rna-NM_001181974.1_MUCL30387 | cds-NP_013188.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:304247-313123:- | gene-YLR087C_MUCL30388 | rna-NM_001181974.1_MUCL30388 | cds-NP_013188.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:296959-305835:- | gene-YLR087C_MUCL39482 | rna-NM_001181974.1_MUCL39482 | cds-NP_013188.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:296882-305758:- | gene-YLR087C_MUCL42920 | rna-NM_001181974.1_MUCL42920 | cds-NP_013188.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:306829-315705:- | gene-YLR087C_NCIM3186 | rna-NM_001181974.1_NCIM3186 | cds-NP_013188.1_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:289030-297906:- | gene-YLR087C_NCYC1407 | rna-NM_001181974.1_NCYC1407 | cds-NP_013188.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:294891-303767:- | gene-YLR087C_PE2H3 | rna-NM_001181974.1_PE2H3 | cds-NP_013188.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:294632-303508:- | gene-YLR087C_PE2H4 | rna-NM_001181974.1_PE2H4 | cds-NP_013188.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:306855-315731:- | gene-YLR087C_S288C | rna-NM_001181974.1_S288C | cds-NP_013188.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:58387-67263:+ | gene-YLR087C_SA1 | rna-NM_001181974.1_SA1 | cds-NP_013188.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:288898-297774:- | gene-YLR087C_ThermosaccDry | rna-NM_001181974.1_ThermosaccDry | cds-NP_013188.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:303083-311959:- | gene-YLR087C_VR1 | rna-NM_001181974.1_VR1 | cds-NP_013188.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:288279-297155:- | gene-YLR087C_ZTW1 | rna-NM_001181974.1_ZTW1 | cds-NP_013188.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:297124-306000:- | gene-YLR087C_Sparadoxus | rna-NM_001181974.1_Sparadoxus | cds-NP_013188.1_Sparadoxus | 91.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |