Gene name: CSC1
Reference locus (S288C): YLR241W
Gene biotype: protein_coding
Description: Calcium permeable gated cation channel; may be involved in detoxification; similar to Arabidopsis CSC1
Top 10 interactors (score): RRT7 (0.891); AIM25 (0.811); YDR433W (0.76); DTR1 (0.713); AAD10 (0.695); DSK2 (0.66); PPG1 (0.651); SPC98 (0.617); RAD23 (0.597); MSS11 (0.591); RFX1 (0.573); LAS21 (0.557); PRO3 (0.541); STE4 (0.504); SCY1 (0.489); UBC6 (0.478); SWR1 (0.478); VPH1 (0.477); APL4 (0.435)
Homologues (species, bitscore): TMEM63A (Homo sapiens, 78.6); Tmem63a (Mus musculus, 82.4); TMEM63C (Danio rerio, 86.7); tmem63c (Xenopus tropicalis, 75.9); CG11210 (Drosophila melanogaster, 80.1); AT3G21620 (Arabidopsis thaliana, 162.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:574680-577028:+ | gene-YLR241W_AKU4011 | rna-NM_001182128.1_AKU4011 | cds-NP_013342.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000170.1:154880-157228:- | gene-YLR241W_BG1 | rna-NM_001182128.1_BG1 | cds-NP_013342.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:608918-611266:+ | gene-YLR241W_Bruggeman | rna-NM_001182128.1_Bruggeman | cds-NP_013342.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:608042-610390:+ | gene-YLR241W_CAT1 | rna-NM_001182128.1_CAT1 | cds-NP_013342.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:610175-612523:+ | gene-YLR241W_CBS1585 | rna-NM_001182128.1_CBS1585 | cds-NP_013342.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:594384-596732:+ | gene-YLR241W_CBS436 | rna-NM_001182128.1_CBS436 | cds-NP_013342.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:573150-575498:+ | gene-YLR241W_CBS6412 | rna-NM_001182128.1_CBS6412 | cds-NP_013342.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:610470-612818:+ | gene-YLR241W_CBS6413 | rna-NM_001182128.1_CBS6413 | cds-NP_013342.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:605084-607432:+ | gene-YLR241W_CENPK1137D | rna-NM_001182128.1_CENPK1137D | cds-NP_013342.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:568217-570565:+ | gene-YLR241W_EthanolRed | rna-NM_001182128.1_EthanolRed | cds-NP_013342.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:597142-599490:+ | gene-YLR241W_FaliES1 | rna-NM_001182128.1_FaliES1 | cds-NP_013342.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000136.1:59400-61748:- | gene-YLR241W_JAY291 | rna-NM_001182128.1_JAY291 | cds-NP_013342.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:609775-612123:+ | gene-YLR241W_MUCL30387 | rna-NM_001182128.1_MUCL30387 | cds-NP_013342.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:613897-616245:+ | gene-YLR241W_MUCL30388 | rna-NM_001182128.1_MUCL30388 | cds-NP_013342.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:611156-613504:+ | gene-YLR241W_MUCL39482 | rna-NM_001182128.1_MUCL39482 | cds-NP_013342.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:605918-608266:+ | gene-YLR241W_MUCL42920 | rna-NM_001182128.1_MUCL42920 | cds-NP_013342.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:620447-622795:+ | gene-YLR241W_NCIM3186 | rna-NM_001182128.1_NCIM3186 | cds-NP_013342.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:598145-600493:+ | gene-YLR241W_NCYC1407 | rna-NM_001182128.1_NCYC1407 | cds-NP_013342.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:601862-604210:+ | gene-YLR241W_PE2H3 | rna-NM_001182128.1_PE2H3 | cds-NP_013342.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:601606-603954:+ | gene-YLR241W_PE2H4 | rna-NM_001182128.1_PE2H4 | cds-NP_013342.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:620473-622821:+ | gene-YLR241W_S288C | rna-NM_001182128.1_S288C | cds-NP_013342.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:59651-61999:- | gene-YLR241W_SA1 | rna-NM_001182128.1_SA1 | cds-NP_013342.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:599642-601990:+ | gene-YLR241W_ThermosaccDry | rna-NM_001182128.1_ThermosaccDry | cds-NP_013342.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:610976-613324:+ | gene-YLR241W_VR1 | rna-NM_001182128.1_VR1 | cds-NP_013342.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:123958-126306:+ | gene-YLR241W_ZTW1 | rna-NM_001182128.1_ZTW1 | cds-NP_013342.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:585143-587491:+ | gene-YLR241W_Sparadoxus | rna-NM_001182128.1_Sparadoxus | cds-NP_013342.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |