Gene name: CSA1
Reference locus (S288C): YPR174C
Gene biotype: protein_coding
Description: Nuclear envelope protein YPR174C; Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the nuclear periphery; potential Cdc28p substrate; binds phosphatidylinositols and phosphatidylethanolamine in a large-scale study; relative distribution to foci at the nuclear periphery increases upon DNA replication stress; YPR174C has a paralog, NBP1, that arose from the whole genome duplication
Top 10 interactors (score): CDC5 (0.751); KCH1 (0.75); GTT3 (0.746); UIP4 (0.71); CDC28 (0.702); UIP3 (0.7); BOP3 (0.696); COS8 (0.679); SLZ1 (0.654); MPS3 (0.645); IRC5 (0.619); FIR1 (0.618); THP3 (0.617); HCM1 (0.614); KEG1 (0.597); AIM44 (0.575); PLM2 (0.572); MPS2 (0.569); PRM3 (0.569); UTP7 (0.568)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:842322-842987:- | gene-YPR174C_AKU4011 | rna-NM_001184271.1_AKU4011 | cds-NP_015500.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:54723-55388:+ | gene-YPR174C_BG1 | rna-NM_001184271.1_BG1 | cds-NP_015500.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:923606-924271:- | gene-YPR174C_Bruggeman | rna-NM_001184271.1_Bruggeman | cds-NP_015500.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:965662-966327:- | gene-YPR174C_CAT1 | rna-NM_001184271.1_CAT1 | cds-NP_015500.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:847124-847789:- | gene-YPR174C_CBS1585 | rna-NM_001184271.1_CBS1585 | cds-NP_015500.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:860670-861335:- | gene-YPR174C_CBS436 | rna-NM_001184271.1_CBS436 | cds-NP_015500.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:848908-849573:- | gene-YPR174C_CBS6412 | rna-NM_001184271.1_CBS6412 | cds-NP_015500.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:844052-844717:- | gene-YPR174C_CBS6413 | rna-NM_001184271.1_CBS6413 | cds-NP_015500.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:888128-888793:- | gene-YPR174C_CENPK1137D | rna-NM_001184271.1_CENPK1137D | cds-NP_015500.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1164084-1164749:- | gene-YPR174C_EthanolRed | rna-NM_001184271.1_EthanolRed | cds-NP_015500.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:844157-844822:- | gene-YPR174C_FaliES1 | rna-NM_001184271.1_FaliES1 | cds-NP_015500.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:31448-32113:- | gene-YPR174C_JAY291 | rna-NM_001184271.1_JAY291 | cds-NP_015500.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:890852-891517:- | gene-YPR174C_MUCL30387 | rna-NM_001184271.1_MUCL30387 | cds-NP_015500.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:864981-865646:- | gene-YPR174C_MUCL30388 | rna-NM_001184271.1_MUCL30388 | cds-NP_015500.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:839324-839989:- | gene-YPR174C_MUCL39482 | rna-NM_001184271.1_MUCL39482 | cds-NP_015500.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:903794-904459:- | gene-YPR174C_MUCL42920 | rna-NM_001184271.1_MUCL42920 | cds-NP_015500.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:888026-888691:- | gene-YPR174C_NCIM3186 | rna-NM_001184271.1_NCIM3186 | cds-NP_015500.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:847685-848350:- | gene-YPR174C_NCYC1407 | rna-NM_001184271.1_NCYC1407 | cds-NP_015500.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:859972-860637:- | gene-YPR174C_PE2H3 | rna-NM_001184271.1_PE2H3 | cds-NP_015500.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:859620-860285:- | gene-YPR174C_PE2H4 | rna-NM_001184271.1_PE2H4 | cds-NP_015500.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:888043-888708:- | gene-YPR174C_S288C | rna-NM_001184271.1_S288C | cds-NP_015500.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:37104-37769:+ | gene-YPR174C_SA1 | rna-NM_001184271.1_SA1 | cds-NP_015500.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:843845-844510:- | gene-YPR174C_ThermosaccDry | rna-NM_001184271.1_ThermosaccDry | cds-NP_015500.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:871627-872292:- | gene-YPR174C_VR1 | rna-NM_001184271.1_VR1 | cds-NP_015500.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:846393-847058:- | gene-YPR174C_ZTW1 | rna-NM_001184271.1_ZTW1 | cds-NP_015500.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:848457-849122:- | gene-YPR174C_Sparadoxus | rna-NM_001184271.1_Sparadoxus | cds-NP_015500.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |