Gene name: CRP1
Reference locus (S288C): YHR146W
Gene biotype: protein_coding
Description: Cruciform dna-recognizing protein 1; Protein that binds to cruciform DNA structures; CRP1 has a paralog, MDG1, that arose from the whole genome duplication
Top 10 interactors (score): VPS34 (0.911); VPS30 (0.908); VPS15 (0.9); YMR196W (0.876); SNF4 (0.867); SDS24 (0.867); SDS23 (0.867); PEP4 (0.828); SNF1 (0.792); YPL150W (0.792); FRK1 (0.792); KIN4 (0.792); PRC1 (0.757); HTD2 (0.744); PIG2 (0.729); MTC1 (0.718); YJL118W (0.712); FYV8 (0.691); SKS1 (0.682); YGR126W (0.659)
Homologues (species, bitscore): aakb-2 (Caenorhabditis elegans, 56.2); AT1G27070 (Arabidopsis thaliana, 50.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:377373-378770:+ | gene-YHR146W_AKU4011 | rna-NM_001179277.1_AKU4011 | cds-NP_012016.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:138989-140386:- | gene-YHR146W_BG1 | rna-NM_001179277.1_BG1 | cds-NP_012016.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:384603-386000:+ | gene-YHR146W_Bruggeman | rna-NM_001179277.1_Bruggeman | cds-NP_012016.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:610306-611703:+ | gene-YHR146W_CAT1 | rna-NM_001179277.1_CAT1 | cds-NP_012016.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:376768-378165:+ | gene-YHR146W_CBS1585 | rna-NM_001179277.1_CBS1585 | cds-NP_012016.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:374222-375619:+ | gene-YHR146W_CBS436 | rna-NM_001179277.1_CBS436 | cds-NP_012016.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:377667-379064:+ | gene-YHR146W_CBS6412 | rna-NM_001179277.1_CBS6412 | cds-NP_012016.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:377706-379103:+ | gene-YHR146W_CBS6413 | rna-NM_001179277.1_CBS6413 | cds-NP_012016.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:383474-384871:+ | gene-YHR146W_CENPK1137D | rna-NM_001179277.1_CENPK1137D | cds-NP_012016.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:436114-437480:+ | gene-YHR146W_EthanolRed | rna-NM_001179277.1_EthanolRed | cds-NP_012016.1_EthanolRed | 96.4 | 97.5 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:378353-379750:+ | gene-YHR146W_FaliES1 | rna-NM_001179277.1_FaliES1 | cds-NP_012016.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000017.1:60146-61543:- | gene-YHR146W_JAY291 | rna-NM_001179277.1_JAY291 | cds-NP_012016.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:385684-387081:+ | gene-YHR146W_MUCL30387 | rna-NM_001179277.1_MUCL30387 | cds-NP_012016.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:385125-386522:+ | gene-YHR146W_MUCL30388 | rna-NM_001179277.1_MUCL30388 | cds-NP_012016.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:376740-378137:+ | gene-YHR146W_MUCL39482 | rna-NM_001179277.1_MUCL39482 | cds-NP_012016.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:383319-384716:+ | gene-YHR146W_MUCL42920 | rna-NM_001179277.1_MUCL42920 | cds-NP_012016.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:390182-391579:+ | gene-YHR146W_NCIM3186 | rna-NM_001179277.1_NCIM3186 | cds-NP_012016.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:379183-380580:+ | gene-YHR146W_NCYC1407 | rna-NM_001179277.1_NCYC1407 | cds-NP_012016.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:378270-379667:+ | gene-YHR146W_PE2H3 | rna-NM_001179277.1_PE2H3 | cds-NP_012016.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:385697-387094:+ | gene-YHR146W_PE2H4 | rna-NM_001179277.1_PE2H4 | cds-NP_012016.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:390300-391697:+ | gene-YHR146W_S288C | rna-NM_001179277.1_S288C | cds-NP_012016.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000070.1:60160-61557:- | gene-YHR146W_SA1 | rna-NM_001179277.1_SA1 | cds-NP_012016.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:379436-380833:+ | gene-YHR146W_ThermosaccDry | rna-NM_001179277.1_ThermosaccDry | cds-NP_012016.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:387252-388649:+ | gene-YHR146W_VR1 | rna-NM_001179277.1_VR1 | cds-NP_012016.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:369681-371078:+ | gene-YHR146W_ZTW1 | rna-NM_001179277.1_ZTW1 | cds-NP_012016.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:375893-377302:+ | gene-YHR146W_Sparadoxus | rna-NM_001179277.1_Sparadoxus | cds-NP_012016.1_Sparadoxus | 85.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |