Gene name: CRC1
Reference locus (S288C): YOR100C
Gene biotype: protein_coding
Description: Solute carrier family 25 (mitochondrial carnitine/acylcarnitine transporter), member 20/29; Mitochondrial inner membrane carnitine transporter; required for carnitine-dependent transport of acetyl-CoA from peroxisomes to mitochondria during fatty acid beta-oxidation; human homolog SLC25A20 complements yeast null mutant
Top 10 interactors (score): CAT2 (0.999); YAT1 (0.985); MPC3 (0.975); COX6 (0.967); CYT1 (0.963); YAT2 (0.962); MPC2 (0.959); MLS1 (0.937); QCR7 (0.929); FAA2 (0.923); FOX2 (0.895); JEN1 (0.881); ACS1 (0.866); FBP1 (0.825); CIT3 (0.815); SIP4 (0.803); ICL1 (0.801); MPC1 (0.77); IDP2 (0.763); YFR045W (0.76)
Homologues (species, bitscore): SLC25A20 (Homo sapiens, 166.8); Slc25a20 (Mus musculus, 165.2); slc25a20 (Danio rerio, 173.7); slc25a20.2 (Xenopus tropicalis, 178.3); colt (Drosophila melanogaster, 186.0); dif-1 (Caenorhabditis elegans, 170.2); BOU (Arabidopsis thaliana, 134.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:497370-498353:- | gene-YOR100C_AKU4011 | rna-NM_001183519.1_AKU4011 | cds-NP_014743.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000171.1:80702-81685:+ | gene-YOR100C_BG1 | rna-NM_001183519.1_BG1 | cds-NP_014743.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:500955-501938:- | gene-YOR100C_Bruggeman | rna-NM_001183519.1_Bruggeman | cds-NP_014743.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:500929-501912:- | gene-YOR100C_CAT1 | rna-NM_001183519.1_CAT1 | cds-NP_014743.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:492662-493645:- | gene-YOR100C_CBS1585 | rna-NM_001183519.1_CBS1585 | cds-NP_014743.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:497690-498673:- | gene-YOR100C_CBS436 | rna-NM_001183519.1_CBS436 | cds-NP_014743.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:491403-492386:- | gene-YOR100C_CBS6412 | rna-NM_001183519.1_CBS6412 | cds-NP_014743.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:498698-499681:- | gene-YOR100C_CBS6413 | rna-NM_001183519.1_CBS6413 | cds-NP_014743.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:513340-514323:- | gene-YOR100C_CENPK1137D | rna-NM_001183519.1_CENPK1137D | cds-NP_014743.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:493902-494885:- | gene-YOR100C_EthanolRed | rna-NM_001183519.1_EthanolRed | cds-NP_014743.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:497411-498394:- | gene-YOR100C_FaliES1 | rna-NM_001183519.1_FaliES1 | cds-NP_014743.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000063.1:60849-61832:+ | gene-YOR100C_JAY291 | rna-NM_001183519.1_JAY291 | cds-NP_014743.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:505491-506474:- | gene-YOR100C_MUCL30387 | rna-NM_001183519.1_MUCL30387 | cds-NP_014743.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:510677-511660:- | gene-YOR100C_MUCL30388 | rna-NM_001183519.1_MUCL30388 | cds-NP_014743.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:500307-501290:- | gene-YOR100C_MUCL39482 | rna-NM_001183519.1_MUCL39482 | cds-NP_014743.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:516397-517380:- | gene-YOR100C_MUCL42920 | rna-NM_001183519.1_MUCL42920 | cds-NP_014743.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:513184-514167:- | gene-YOR100C_NCIM3186 | rna-NM_001183519.1_NCIM3186 | cds-NP_014743.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:506759-507742:- | gene-YOR100C_NCYC1407 | rna-NM_001183519.1_NCYC1407 | cds-NP_014743.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:505761-506744:- | gene-YOR100C_PE2H3 | rna-NM_001183519.1_PE2H3 | cds-NP_014743.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:516137-517120:- | gene-YOR100C_PE2H4 | rna-NM_001183519.1_PE2H4 | cds-NP_014743.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:513295-514278:- | gene-YOR100C_S288C | rna-NM_001183519.1_S288C | cds-NP_014743.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000098.1:8534-9517:+ | gene-YOR100C_SA1 | rna-NM_001183519.1_SA1 | cds-NP_014743.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:496565-497548:- | gene-YOR100C_ThermosaccDry | rna-NM_001183519.1_ThermosaccDry | cds-NP_014743.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:498688-499671:- | gene-YOR100C_VR1 | rna-NM_001183519.1_VR1 | cds-NP_014743.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:230554-231537:- | gene-YOR100C_ZTW1 | rna-NM_001183519.1_ZTW1 | cds-NP_014743.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:502517-503500:- | gene-YOR100C_Sparadoxus | rna-NM_001183519.1_Sparadoxus | cds-NP_014743.1_Sparadoxus | 92.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |