Gene name: CPT1
Reference locus (S288C): YNL130C
Gene biotype: protein_coding
Description: Cholinephosphotransferase; required for phosphatidylcholine biosynthesis and for inositol-dependent regulation of EPT1 transcription; CPT1 has a paralog, EPT1, that arose from the whole genome duplication
Top 10 interactors (score): EPT1 (0.999); PCT1 (0.996); OPI3 (0.989); PAH1 (0.982); DGK1 (0.971); SPO14 (0.966); ALE1 (0.963); LPP1 (0.956); NTE1 (0.949); DPP1 (0.934); TGL4 (0.931); SCS2 (0.924); ECT1 (0.92); TGL5 (0.914); EKI1 (0.913); SCS22 (0.909); PAC1 (0.9); INO1 (0.892); CKI1 (0.879); PSD1 (0.875)
Homologues (species, bitscore): EPT1 (Homo sapiens, 125.2); Ept1 (Mus musculus, 126.7); cept1a (Danio rerio, 131.3); cept1 (Xenopus tropicalis, 124.4); CG33116 (Drosophila melanogaster, 123.6); Y49A3A.1 (Caenorhabditis elegans, 123.2); AAPT1 (Arabidopsis thaliana, 186.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:373240-374513:- | gene-YNL130C_AKU4011 | rna-NM_001182968.3_AKU4011 | cds-NP_014269.4_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:277235-278508:- | gene-YNL130C_BG1 | rna-NM_001182968.3_BG1 | cds-NP_014269.4_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:383337-384610:- | gene-YNL130C_Bruggeman | rna-NM_001182968.3_Bruggeman | cds-NP_014269.4_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:426537-427810:- | gene-YNL130C_CAT1 | rna-NM_001182968.3_CAT1 | cds-NP_014269.4_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:373860-375133:- | gene-YNL130C_CBS1585 | rna-NM_001182968.3_CBS1585 | cds-NP_014269.4_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:442253-443526:- | gene-YNL130C_CBS436 | rna-NM_001182968.3_CBS436 | cds-NP_014269.4_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:369314-370587:- | gene-YNL130C_CBS6412 | rna-NM_001182968.3_CBS6412 | cds-NP_014269.4_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:370278-371551:- | gene-YNL130C_CBS6413 | rna-NM_001182968.3_CBS6413 | cds-NP_014269.4_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:373409-374682:- | gene-YNL130C_CENPK1137D | rna-NM_001182968.3_CENPK1137D | cds-NP_014269.4_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:370229-371502:- | gene-YNL130C_EthanolRed | rna-NM_001182968.3_EthanolRed | cds-NP_014269.4_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:366131-367404:- | gene-YNL130C_FaliES1 | rna-NM_001182968.3_FaliES1 | cds-NP_014269.4_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000021.1:22512-23785:- | gene-YNL130C_JAY291 | rna-NM_001182968.3_JAY291 | cds-NP_014269.4_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:379352-380625:- | gene-YNL130C_MUCL30387 | rna-NM_001182968.3_MUCL30387 | cds-NP_014269.4_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:414468-415741:- | gene-YNL130C_MUCL30388 | rna-NM_001182968.3_MUCL30388 | cds-NP_014269.4_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:371140-372413:- | gene-YNL130C_MUCL39482 | rna-NM_001182968.3_MUCL39482 | cds-NP_014269.4_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:374133-375406:- | gene-YNL130C_MUCL42920 | rna-NM_001182968.3_MUCL42920 | cds-NP_014269.4_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:379527-380800:- | gene-YNL130C_NCIM3186 | rna-NM_001182968.3_NCIM3186 | cds-NP_014269.4_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:373272-374545:- | gene-YNL130C_NCYC1407 | rna-NM_001182968.3_NCYC1407 | cds-NP_014269.4_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:372260-373533:- | gene-YNL130C_PE2H3 | rna-NM_001182968.3_PE2H3 | cds-NP_014269.4_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:371648-372921:- | gene-YNL130C_PE2H4 | rna-NM_001182968.3_PE2H4 | cds-NP_014269.4_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:379558-380831:- | gene-YNL130C_S288C | rna-NM_001182968.3_S288C | cds-NP_014269.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:32685-33958:+ | gene-YNL130C_SA1 | rna-NM_001182968.3_SA1 | cds-NP_014269.4_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:366985-368258:- | gene-YNL130C_ThermosaccDry | rna-NM_001182968.3_ThermosaccDry | cds-NP_014269.4_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:385649-386922:- | gene-YNL130C_VR1 | rna-NM_001182968.3_VR1 | cds-NP_014269.4_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:276821-278094:- | gene-YNL130C_ZTW1 | rna-NM_001182968.3_ZTW1 | cds-NP_014269.4_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:377786-379059:- | gene-YNL130C_Sparadoxus | rna-NM_001182968.3_Sparadoxus | cds-NP_014269.4_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |