Gene name: CPD1
Reference locus (S288C): YGR247W
Gene biotype: protein_coding
Description: 2',3'-cyclic-nucleotide 3'-phosphodiesterase; Cyclic nucleotide phosphodiesterase; hydrolyzes ADP-ribose 1'', 2''-cyclic phosphate to ADP-ribose 1''-phosphate; may have a role in tRNA splicing; no detectable phenotype is conferred by null mutation or by overexpression; protein abundance increases in response to DNA replication stress
Top 10 interactors (score): TPT1 (0.9); POA1 (0.9); GUP1 (0.813); URC2 (0.745); URH1 (0.671); SPC19 (0.572); FUR1 (0.569); CAR2 (0.526)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:950388-951107:+ | gene-YGR247W_AKU4011 | rna-NM_001181376.1_AKU4011 | cds-NP_011763.1_AKU4011 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:230488-231207:+ | gene-YGR247W_BG1 | rna-NM_001181376.1_BG1 | cds-NP_011763.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:957984-958703:+ | gene-YGR247W_Bruggeman | rna-NM_001181376.1_Bruggeman | cds-NP_011763.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:957498-958217:+ | gene-YGR247W_CAT1 | rna-NM_001181376.1_CAT1 | cds-NP_011763.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:953244-953963:+ | gene-YGR247W_CBS1585 | rna-NM_001181376.1_CBS1585 | cds-NP_011763.1_CBS1585 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:956888-957607:+ | gene-YGR247W_CBS436 | rna-NM_001181376.1_CBS436 | cds-NP_011763.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:944126-944845:+ | gene-YGR247W_CBS6412 | rna-NM_001181376.1_CBS6412 | cds-NP_011763.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:950179-950898:+ | gene-YGR247W_CBS6413 | rna-NM_001181376.1_CBS6413 | cds-NP_011763.1_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:984647-985369:+ | gene-YGR247W_CENPK1137D | rna-NM_001181376.1_CENPK1137D | cds-NP_011763.1_CENPK1137D | 99.5 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:938218-938937:+ | gene-YGR247W_EthanolRed | rna-NM_001181376.1_EthanolRed | cds-NP_011763.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:943025-943744:+ | gene-YGR247W_FaliES1 | rna-NM_001181376.1_FaliES1 | cds-NP_011763.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000076.1:86557-87276:- | gene-YGR247W_JAY291 | rna-NM_001181376.1_JAY291 | cds-NP_011763.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:955899-956618:+ | gene-YGR247W_MUCL30387 | rna-NM_001181376.1_MUCL30387 | cds-NP_011763.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:955165-955884:+ | gene-YGR247W_MUCL30388 | rna-NM_001181376.1_MUCL30388 | cds-NP_011763.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:948369-949088:+ | gene-YGR247W_MUCL39482 | rna-NM_001181376.1_MUCL39482 | cds-NP_011763.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:966877-967596:+ | gene-YGR247W_MUCL42920 | rna-NM_001181376.1_MUCL42920 | cds-NP_011763.1_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:984966-985685:+ | gene-YGR247W_NCIM3186 | rna-NM_001181376.1_NCIM3186 | cds-NP_011763.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:943988-944707:+ | gene-YGR247W_NCYC1407 | rna-NM_001181376.1_NCYC1407 | cds-NP_011763.1_NCYC1407 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:969162-969881:+ | gene-YGR247W_PE2H3 | rna-NM_001181376.1_PE2H3 | cds-NP_011763.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:974001-974720:+ | gene-YGR247W_PE2H4 | rna-NM_001181376.1_PE2H4 | cds-NP_011763.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:984966-985685:+ | gene-YGR247W_S288C | rna-NM_001181376.1_S288C | cds-NP_011763.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:15801-16520:- | gene-YGR247W_SA1 | rna-NM_001181376.1_SA1 | cds-NP_011763.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:963552-964271:+ | gene-YGR247W_ThermosaccDry | rna-NM_001181376.1_ThermosaccDry | cds-NP_011763.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:1068813-1069532:+ | gene-YGR247W_VR1 | rna-NM_001181376.1_VR1 | cds-NP_011763.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:264955-265674:+ | gene-YGR247W_ZTW1 | rna-NM_001181376.1_ZTW1 | cds-NP_011763.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:955749-956468:+ | gene-YGR247W_Sparadoxus | rna-NM_001181376.1_Sparadoxus | cds-NP_011763.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |