Gene name: CPA2
Reference locus (S288C): YJR109C
Gene biotype: protein_coding
Description: Carbamoyl-phosphate synthase arginine-specific large chain; Large subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor
Top 10 interactors (score): CPA1 (0.999); ARG1 (0.999); ARG3 (0.995); ADE4 (0.99); ARG5,6 (0.99); YMR084W (0.977); ARG4 (0.969); GLN1 (0.961); HIS4 (0.959); ADE6 (0.957); GFA1 (0.955); URA2 (0.952); GLT1 (0.95); ARG7 (0.913); YOR302W (0.908); GUA1 (0.86); DAL1 (0.857); URA7 (0.801); CAR2 (0.798); TRP5 (0.781)
Homologues (species, bitscore): CAD (Homo sapiens, 1128.6); Cad (Mus musculus, 1117.8); cad (Danio rerio, 1157.1); cps1 (Xenopus tropicalis, 1088.6); r (Drosophila melanogaster, 1118.2); pyr-1 (Caenorhabditis elegans, 1075.5); CARB (Arabidopsis thaliana, 755.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:601089-604445:- | gene-YJR109C_AKU4011 | rna-NM_001181767.3_AKU4011 | cds-NP_012643.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:2866-6222:+ | gene-YJR109C_BG1 | rna-NM_001181767.3_BG1 | cds-NP_012643.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:616817-620173:- | gene-YJR109C_Bruggeman | rna-NM_001181767.3_Bruggeman | cds-NP_012643.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:620580-623936:- | gene-YJR109C_CAT1 | rna-NM_001181767.3_CAT1 | cds-NP_012643.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:613145-616501:- | gene-YJR109C_CBS1585 | rna-NM_001181767.3_CBS1585 | cds-NP_012643.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:632019-635375:- | gene-YJR109C_CBS436 | rna-NM_001181767.3_CBS436 | cds-NP_012643.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:600292-603648:- | gene-YJR109C_CBS6412 | rna-NM_001181767.3_CBS6412 | cds-NP_012643.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:602553-605909:- | gene-YJR109C_CBS6413 | rna-NM_001181767.3_CBS6413 | cds-NP_012643.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:611903-615259:- | gene-YJR109C_CENPK1137D | rna-NM_001181767.3_CENPK1137D | cds-NP_012643.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:605507-608863:- | gene-YJR109C_EthanolRed | rna-NM_001181767.3_EthanolRed | cds-NP_012643.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:616973-620329:- | gene-YJR109C_FaliES1 | rna-NM_001181767.3_FaliES1 | cds-NP_012643.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000054.1:68807-72163:+ | gene-YJR109C_JAY291 | rna-NM_001181767.3_JAY291 | cds-NP_012643.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:615649-619005:- | gene-YJR109C_MUCL30387 | rna-NM_001181767.3_MUCL30387 | cds-NP_012643.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:613336-616692:- | gene-YJR109C_MUCL30388 | rna-NM_001181767.3_MUCL30388 | cds-NP_012643.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:606613-609969:- | gene-YJR109C_MUCL39482 | rna-NM_001181767.3_MUCL39482 | cds-NP_012643.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:611115-614471:- | gene-YJR109C_MUCL42920 | rna-NM_001181767.3_MUCL42920 | cds-NP_012643.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:629564-632920:- | gene-YJR109C_NCIM3186 | rna-NM_001181767.3_NCIM3186 | cds-NP_012643.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:604171-607527:- | gene-YJR109C_NCYC1407 | rna-NM_001181767.3_NCYC1407 | cds-NP_012643.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:622353-625709:- | gene-YJR109C_PE2H3 | rna-NM_001181767.3_PE2H3 | cds-NP_012643.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:616042-619398:- | gene-YJR109C_PE2H4 | rna-NM_001181767.3_PE2H4 | cds-NP_012643.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:629585-632941:- | gene-YJR109C_S288C | rna-NM_001181767.3_S288C | cds-NP_012643.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000038.1:88427-91783:- | gene-YJR109C_SA1 | rna-NM_001181767.3_SA1 | cds-NP_012643.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:610907-614263:- | gene-YJR109C_ThermosaccDry | rna-NM_001181767.3_ThermosaccDry | cds-NP_012643.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:613297-616653:- | gene-YJR109C_VR1 | rna-NM_001181767.3_VR1 | cds-NP_012643.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:590272-593628:- | gene-YJR109C_ZTW1 | rna-NM_001181767.3_ZTW1 | cds-NP_012643.3_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:624466-627822:- | gene-YJR109C_Sparadoxus | rna-NM_001181767.3_Sparadoxus | cds-NP_012643.3_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |