Gene name: CPA1
Reference locus (S288C): YOR303W
Gene biotype: protein_coding
Description: Carbamoyl-phosphate synthase arginine-specific small chain; Small subunit of carbamoyl phosphate synthetase; carbamoyl phosphate synthetase catalyzes a step in the synthesis of citrulline, an arginine precursor; translationally regulated by an attenuator peptide encoded by YOR302W within the CPA1 mRNA 5'-leader; Belongs to the CarA family
Top 10 interactors (score): CPA2 (0.999); ARG3 (0.995); ARG1 (0.994); YOR302W (0.986); ARG5,6 (0.985); ADE4 (0.981); YMR084W (0.969); GLN1 (0.961); GLT1 (0.956); URA2 (0.951); GFA1 (0.944); FUR1 (0.893); ARG7 (0.879); ADE6 (0.877); FUR4 (0.872); ARG8 (0.863); DAL1 (0.857); ARG4 (0.854); GUA1 (0.848); ORT1 (0.839)
Homologues (species, bitscore): CAD (Homo sapiens, 364.4); Cad (Mus musculus, 365.2); cad (Danio rerio, 379.8); cps1 (Xenopus tropicalis, 358.6); r (Drosophila melanogaster, 332.4); pyr-1 (Caenorhabditis elegans, 352.8); CARA (Arabidopsis thaliana, 209.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:873366-874601:+ | gene-YOR303W_AKU4011 | rna-NM_001183722.3_AKU4011 | cds-NP_014947.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:275381-276616:+ | gene-YOR303W_BG1 | rna-NM_001183722.3_BG1 | cds-NP_014947.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:858791-860026:+ | gene-YOR303W_Bruggeman | rna-NM_001183722.3_Bruggeman | cds-NP_014947.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:859532-860767:+ | gene-YOR303W_CAT1 | rna-NM_001183722.3_CAT1 | cds-NP_014947.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:857176-858411:+ | gene-YOR303W_CBS1585 | rna-NM_001183722.3_CBS1585 | cds-NP_014947.3_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:855025-856260:+ | gene-YOR303W_CBS436 | rna-NM_001183722.3_CBS436 | cds-NP_014947.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:852893-854128:+ | gene-YOR303W_CBS6412 | rna-NM_001183722.3_CBS6412 | cds-NP_014947.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:862021-863256:+ | gene-YOR303W_CBS6413 | rna-NM_001183722.3_CBS6413 | cds-NP_014947.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:882687-883922:+ | gene-YOR303W_CENPK1137D | rna-NM_001183722.3_CENPK1137D | cds-NP_014947.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:849275-850510:+ | gene-YOR303W_EthanolRed | rna-NM_001183722.3_EthanolRed | cds-NP_014947.3_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:854895-856130:+ | gene-YOR303W_FaliES1 | rna-NM_001183722.3_FaliES1 | cds-NP_014947.3_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:147117-148352:- | gene-YOR303W_JAY291 | rna-NM_001183722.3_JAY291 | cds-NP_014947.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:863037-864272:+ | gene-YOR303W_MUCL30387 | rna-NM_001183722.3_MUCL30387 | cds-NP_014947.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:871037-872272:+ | gene-YOR303W_MUCL30388 | rna-NM_001183722.3_MUCL30388 | cds-NP_014947.3_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:863722-864957:+ | gene-YOR303W_MUCL39482 | rna-NM_001183722.3_MUCL39482 | cds-NP_014947.3_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:873222-874457:+ | gene-YOR303W_MUCL42920 | rna-NM_001183722.3_MUCL42920 | cds-NP_014947.3_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:882788-884023:+ | gene-YOR303W_NCIM3186 | rna-NM_001183722.3_NCIM3186 | cds-NP_014947.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:864731-865966:+ | gene-YOR303W_NCYC1407 | rna-NM_001183722.3_NCYC1407 | cds-NP_014947.3_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:862965-864200:+ | gene-YOR303W_PE2H3 | rna-NM_001183722.3_PE2H3 | cds-NP_014947.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:879317-880552:+ | gene-YOR303W_PE2H4 | rna-NM_001183722.3_PE2H4 | cds-NP_014947.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:882899-884134:+ | gene-YOR303W_S288C | rna-NM_001183722.3_S288C | cds-NP_014947.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000090.1:5609-6844:- | gene-YOR303W_SA1 | rna-NM_001183722.3_SA1 | cds-NP_014947.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:854081-855316:+ | gene-YOR303W_ThermosaccDry | rna-NM_001183722.3_ThermosaccDry | cds-NP_014947.3_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:917408-918643:+ | gene-YOR303W_VR1 | rna-NM_001183722.3_VR1 | cds-NP_014947.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:586962-588197:+ | gene-YOR303W_ZTW1 | rna-NM_001183722.3_ZTW1 | cds-NP_014947.3_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:861150-862385:+ | gene-YOR303W_Sparadoxus | rna-NM_001183722.3_Sparadoxus | cds-NP_014947.3_Sparadoxus | 89.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |