Gene name: COY1
Reference locus (S288C): YKL179C
Gene biotype: protein_coding
Description: Homeobox protein cut-like; Golgi membrane protein with similarity to mammalian CASP; genetic interactions with GOS1 (encoding a Golgi snare protein) suggest a role in Golgi function
Top 10 interactors (score): RUD3 (0.981); SEC4 (0.977); USO1 (0.918); SGM1 (0.909); GOS1 (0.904); GRH1 (0.876); SED5 (0.852); COG3 (0.801); COG4 (0.791); TED1 (0.783); COG2 (0.777); MTC1 (0.775); CPR7 (0.756); YET3 (0.741); ERP5 (0.716); MNL2 (0.672); COG1 (0.661); BUG1 (0.658); SSP120 (0.65); YCR061W (0.646)
Homologues (species, bitscore): CUX1 (Homo sapiens, 104.8); Cux1 (Mus musculus, 105.1); cux1b (Danio rerio, 199.1); cux2 (Xenopus tropicalis, 55.8); ceh-44 (Caenorhabditis elegans, 55.1); CASP (Arabidopsis thaliana, 175.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:97320-99359:- | gene-YKL179C_AKU4011 | rna-NM_001179745.1_AKU4011 | cds-NP_012742.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000030.1:73846-75885:- | gene-YKL179C_BG1 | rna-NM_001179745.1_BG1 | cds-NP_012742.1_BG1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:114708-116747:- | gene-YKL179C_Bruggeman | rna-NM_001179745.1_Bruggeman | cds-NP_012742.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:109664-111703:- | gene-YKL179C_CAT1 | rna-NM_001179745.1_CAT1 | cds-NP_012742.1_CAT1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:109302-111341:- | gene-YKL179C_CBS1585 | rna-NM_001179745.1_CBS1585 | cds-NP_012742.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:108060-110099:- | gene-YKL179C_CBS436 | rna-NM_001179745.1_CBS436 | cds-NP_012742.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:94892-96931:- | gene-YKL179C_CBS6412 | rna-NM_001179745.1_CBS6412 | cds-NP_012742.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:110020-112059:- | gene-YKL179C_CBS6413 | rna-NM_001179745.1_CBS6413 | cds-NP_012742.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:110290-112329:- | gene-YKL179C_CENPK1137D | rna-NM_001179745.1_CENPK1137D | cds-NP_012742.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:108206-110245:- | gene-YKL179C_EthanolRed | rna-NM_001179745.1_EthanolRed | cds-NP_012742.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:108907-110946:- | gene-YKL179C_FaliES1 | rna-NM_001179745.1_FaliES1 | cds-NP_012742.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000006.2:107889-109928:- | gene-YKL179C_JAY291 | rna-NM_001179745.1_JAY291 | cds-NP_012742.1_JAY291 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:117009-119048:- | gene-YKL179C_MUCL30387 | rna-NM_001179745.1_MUCL30387 | cds-NP_012742.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:111352-113391:- | gene-YKL179C_MUCL30388 | rna-NM_001179745.1_MUCL30388 | cds-NP_012742.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:109359-111398:- | gene-YKL179C_MUCL39482 | rna-NM_001179745.1_MUCL39482 | cds-NP_012742.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:113690-115729:- | gene-YKL179C_MUCL42920 | rna-NM_001179745.1_MUCL42920 | cds-NP_012742.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:110453-112492:- | gene-YKL179C_NCIM3186 | rna-NM_001179745.1_NCIM3186 | cds-NP_012742.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:109383-111422:- | gene-YKL179C_NCYC1407 | rna-NM_001179745.1_NCYC1407 | cds-NP_012742.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:116433-118472:- | gene-YKL179C_PE2H3 | rna-NM_001179745.1_PE2H3 | cds-NP_012742.1_PE2H3 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:112727-114766:- | gene-YKL179C_PE2H4 | rna-NM_001179745.1_PE2H4 | cds-NP_012742.1_PE2H4 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:110464-112503:- | gene-YKL179C_S288C | rna-NM_001179745.1_S288C | cds-NP_012742.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000008.1:26666-28705:- | gene-YKL179C_SA1 | rna-NM_001179745.1_SA1 | cds-NP_012742.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:109607-111646:- | gene-YKL179C_ThermosaccDry | rna-NM_001179745.1_ThermosaccDry | cds-NP_012742.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:108138-110177:- | gene-YKL179C_VR1 | rna-NM_001179745.1_VR1 | cds-NP_012742.1_VR1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:108009-110048:- | gene-YKL179C_ZTW1 | rna-NM_001179745.1_ZTW1 | cds-NP_012742.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:122552-124591:- | gene-YKL179C_Sparadoxus | rna-NM_001179745.1_Sparadoxus | cds-NP_012742.1_Sparadoxus | 89.8 | 99.8 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |