Gene name: COX5B
Reference locus (S288C): YIL111W
Gene biotype: protein_coding
Description: Subunit Vb of cytochrome c oxidase; cytochrome c oxidase is the terminal member of the mitochondrial inner membrane electron transport chain; Cox5Bp is predominantly expressed during anaerobic growth while its isoform Va (Cox5Ap) is expressed during aerobic growth; COX5B has a paralog, COX5A, that arose from the whole genome duplication
Top 10 interactors (score): COX2 (0.999); COX6 (0.999); COX4 (0.999); COX13 (0.999); QCR2 (0.999); COX8 (0.998); CYT1 (0.998); COX12 (0.998); COX1 (0.996); COX3 (0.995); RIP1 (0.995); COR1 (0.994); QCR8 (0.994); COX9 (0.994); COX7 (0.994); QCR9 (0.992); QCR7 (0.991); QCR6 (0.988); COB (0.985); QCR10 (0.985)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005303.1:156702-157245:+ | gene-YIL111W_AKU4011 | rna-NM_001179459.1_AKU4011 | cds-NP_012155.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000164.1:19629-20172:+ | gene-YIL111W_BG1 | rna-NM_001179459.1_BG1 | cds-NP_012155.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005511.1:161332-161875:+ | gene-YIL111W_Bruggeman | rna-NM_001179459.1_Bruggeman | cds-NP_012155.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005527.1:153374-153917:+ | gene-YIL111W_CAT1 | rna-NM_001179459.1_CAT1 | cds-NP_012155.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005367.1:156961-157504:+ | gene-YIL111W_CBS1585 | rna-NM_001179459.1_CBS1585 | cds-NP_012155.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005351.1:147872-148415:+ | gene-YIL111W_CBS436 | rna-NM_001179459.1_CBS436 | cds-NP_012155.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005335.1:154336-154879:+ | gene-YIL111W_CBS6412 | rna-NM_001179459.1_CBS6412 | cds-NP_012155.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005319.1:147990-148533:+ | gene-YIL111W_CBS6413 | rna-NM_001179459.1_CBS6413 | cds-NP_012155.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001530.1:146838-147381:+ | gene-YIL111W_CENPK1137D | rna-NM_001179459.1_CENPK1137D | cds-NP_012155.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005479.1:141926-142469:+ | gene-YIL111W_EthanolRed | rna-NM_001179459.1_EthanolRed | cds-NP_012155.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005543.1:157925-158468:+ | gene-YIL111W_FaliES1 | rna-NM_001179459.1_FaliES1 | cds-NP_012155.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000025.1:70080-70623:- | gene-YIL111W_JAY291 | rna-NM_001179459.1_JAY291 | cds-NP_012155.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005415.1:158176-158719:+ | gene-YIL111W_MUCL30387 | rna-NM_001179459.1_MUCL30387 | cds-NP_012155.1_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005447.1:156916-157459:+ | gene-YIL111W_MUCL30388 | rna-NM_001179459.1_MUCL30388 | cds-NP_012155.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005287.1:157805-158348:+ | gene-YIL111W_MUCL39482 | rna-NM_001179459.1_MUCL39482 | cds-NP_012155.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005431.1:161061-161604:+ | gene-YIL111W_MUCL42920 | rna-NM_001179459.1_MUCL42920 | cds-NP_012155.1_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011818.1:155222-155765:+ | gene-YIL111W_NCIM3186 | rna-NM_001179459.1_NCIM3186 | cds-NP_012155.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005271.1:161849-162392:+ | gene-YIL111W_NCYC1407 | rna-NM_001179459.1_NCYC1407 | cds-NP_012155.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994148.1:156339-156882:+ | gene-YIL111W_PE2H3 | rna-NM_001179459.1_PE2H3 | cds-NP_012155.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999880.1:150371-150914:+ | gene-YIL111W_PE2H4 | rna-NM_001179459.1_PE2H4 | cds-NP_012155.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001141.2:155222-155765:+ | gene-YIL111W_S288C | rna-NM_001179459.1_S288C | cds-NP_012155.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000058.1:27594-28137:- | gene-YIL111W_SA1 | rna-NM_001179459.1_SA1 | cds-NP_012155.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005495.1:156582-157125:+ | gene-YIL111W_ThermosaccDry | rna-NM_001179459.1_ThermosaccDry | cds-NP_012155.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005463.1:153489-154032:+ | gene-YIL111W_VR1 | rna-NM_001179459.1_VR1 | cds-NP_012155.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000019.1:131525-132068:+ | gene-YIL111W_ZTW1 | rna-NM_001179459.1_ZTW1 | cds-NP_012155.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047495.1:149327-149871:+ | gene-YIL111W_Sparadoxus | rna-NM_001179459.1_Sparadoxus | cds-NP_012155.1_Sparadoxus | 90.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |