COX2 (Q0250)

Gene profile

Gene name: COX2
Reference locus (S288C): Q0250
Gene biotype: protein_coding

Description: Subunit II of cytochrome c oxidase (Complex IV); Complex IV is the terminal member of the mitochondrial inner membrane electron transport chain; one of three mitochondrially-encoded subunits

Top 10 interactors (score): RIP1 (0.999); COX13 (0.999); COX6 (0.999); BI4 (0.999); COX3 (0.999); COX4 (0.999); COX5B (0.999); COX1 (0.999); COR1 (0.999); COX8 (0.999); COX12 (0.999); COB (0.999); COX5A (0.999); CYT1 (0.999); QCR2 (0.999); ATP6 (0.998); QCR8 (0.998); QCR6 (0.998); QCR9 (0.998); COX7 (0.997)

Homologues (species, bitscore): MT-CO2 (Homo sapiens, 200.7); mt-Co2 (Mus musculus, 206.5); COX2 (Danio rerio, 226.9); COX2 (Xenopus tropicalis, 218.8); mt:CoII (Drosophila melanogaster, 233.0); COX2 (Caenorhabditis elegans, 143.7); COX2 (Arabidopsis thaliana, 242.3)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:61334-62089:+ gene-Q0250_AKU4011 rna-Q0250_AKU4011 cds-NP_009326.1_AKU4011 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:71207-71962:+ gene-Q0250_Bruggeman rna-Q0250_Bruggeman cds-NP_009326.1_Bruggeman 99.2 100.0 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000376.1:63408-64163:+ gene-Q0250_CAT1 rna-Q0250_CAT1 cds-NP_009326.1_CAT1 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:60997-61752:+ gene-Q0250_CBS1585 rna-Q0250_CBS1585 cds-NP_009326.1_CBS1585 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:68812-69567:+ gene-Q0250_CBS436 rna-Q0250_CBS436 cds-NP_009326.1_CBS436 99.6 100.0 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:58072-58827:+ gene-Q0250_CBS6412 rna-Q0250_CBS6412 cds-NP_009326.1_CBS6412 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000101.1:11637-12392:+ gene-Q0250_CBS6413 rna-Q0250_CBS6413 cds-NP_009326.1_CBS6413 97.4 100.0 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:55304-56059:+ gene-Q0250_EthanolRed rna-Q0250_EthanolRed cds-NP_009326.1_EthanolRed 97.3 100.0 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:52100-52855:+ gene-Q0250_FaliES1 rna-Q0250_FaliES1 cds-NP_009326.1_FaliES1 97.3 100.0 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000051.1:4890-5645:+ gene-Q0250_JAY291 rna-Q0250_JAY291 cds-NP_009326.1_JAY291 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:65911-66666:+ gene-Q0250_MUCL30387 rna-Q0250_MUCL30387 cds-NP_009326.1_MUCL30387 99.2 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:59835-60590:+ gene-Q0250_MUCL30388 rna-Q0250_MUCL30388 cds-NP_009326.1_MUCL30388 99.2 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:52918-53673:+ gene-Q0250_MUCL39482 rna-Q0250_MUCL39482 cds-NP_009326.1_MUCL39482 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:69582-70337:+ gene-Q0250_MUCL42920 rna-Q0250_MUCL42920 cds-NP_009326.1_MUCL42920 99.2 100.0 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:73758-74513:+ gene-Q0250_NCIM3186 rna-Q0250_NCIM3186 cds-NP_009326.1_NCIM3186 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000068.1:375-1130:+ gene-Q0250_NCYC1407 rna-Q0250_NCYC1407 cds-NP_009326.1_NCYC1407 97.4 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:67006-67761:+ gene-Q0250_PE2H3 rna-Q0250_PE2H3 cds-NP_009326.1_PE2H3 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:67006-67761:+ gene-Q0250_PE2H4 rna-Q0250_PE2H4 cds-NP_009326.1_PE2H4 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:73758-74513:+ gene-Q0250_S288C rna-Q0250_S288C cds-NP_009326.1_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:39547-40302:- gene-Q0250_SA1 rna-Q0250_SA1 cds-NP_009326.1_SA1 97.2 100.0 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:59346-60101:+ gene-Q0250_ThermosaccDry rna-Q0250_ThermosaccDry cds-NP_009326.1_ThermosaccDry 97.3 100.0 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:58259-59014:+ gene-Q0250_VR1 rna-Q0250_VR1 cds-NP_009326.1_VR1 97.6 100.0 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:13940-14695:+ gene-Q0250_Sparadoxus rna-Q0250_Sparadoxus cds-NP_009326.1_Sparadoxus 97.2 100.0 Unannotated 1 1 0 Unknown False False False False

Additional files