Gene name: COP1
Reference locus (S288C): YDL145C
Gene biotype: protein_coding
Description: Alpha subunit of COPI vesicle coatomer complex; complex surrounds transport vesicles in the early secretory pathway
Top 10 interactors (score): SEC21 (0.999); RET2 (0.999); RET3 (0.999); SEC26 (0.999); SEC27 (0.999); SEC28 (0.999); GLO3 (0.995); GEA2 (0.988); STT3 (0.975); GEA1 (0.973); ARF1 (0.971); CHC1 (0.964); ERD2 (0.963); YPF1 (0.963); SEC31 (0.962); DSL1 (0.942); SFB3 (0.934); SEC13 (0.925); SEC23 (0.922); SPS18 (0.922)
Homologues (species, bitscore): COPA (Homo sapiens, 1042.0); Copa (Mus musculus, 1047.7); copa (Danio rerio, 1023.1); copa (Xenopus tropicalis, 947.6); alphaCOP (Drosophila melanogaster, 1000.7); Y71F9AL.17 (Caenorhabditis elegans, 931.4); AT1G62020 (Arabidopsis thaliana, 983.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:178988-182593:- | gene-YDL145C_AKU4011 | rna-NM_001180205.1_AKU4011 | cds-NP_010136.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:367185-370790:+ | gene-YDL145C_BG1 | rna-NM_001180205.1_BG1 | cds-NP_010136.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:195031-198636:- | gene-YDL145C_Bruggeman | rna-NM_001180205.1_Bruggeman | cds-NP_010136.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:193353-196958:- | gene-YDL145C_CAT1 | rna-NM_001180205.1_CAT1 | cds-NP_010136.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:177019-180624:- | gene-YDL145C_CBS1585 | rna-NM_001180205.1_CBS1585 | cds-NP_010136.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:193957-197562:- | gene-YDL145C_CBS436 | rna-NM_001180205.1_CBS436 | cds-NP_010136.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:176272-179877:- | gene-YDL145C_CBS6412 | rna-NM_001180205.1_CBS6412 | cds-NP_010136.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:195457-199062:- | gene-YDL145C_CBS6413 | rna-NM_001180205.1_CBS6413 | cds-NP_010136.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:193223-196828:- | gene-YDL145C_CENPK1137D | rna-NM_001180205.1_CENPK1137D | cds-NP_010136.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:190227-193832:- | gene-YDL145C_EthanolRed | rna-NM_001180205.1_EthanolRed | cds-NP_010136.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:195759-199364:- | gene-YDL145C_FaliES1 | rna-NM_001180205.1_FaliES1 | cds-NP_010136.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000032.1:20186-23791:+ | gene-YDL145C_JAY291 | rna-NM_001180205.1_JAY291 | cds-NP_010136.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:194145-197750:- | gene-YDL145C_MUCL30387 | rna-NM_001180205.1_MUCL30387 | cds-NP_010136.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:185005-188610:- | gene-YDL145C_MUCL30388 | rna-NM_001180205.1_MUCL30388 | cds-NP_010136.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:178174-181779:- | gene-YDL145C_MUCL39482 | rna-NM_001180205.1_MUCL39482 | cds-NP_010136.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | MBVV01000205.1:20141-23746:+ | gene-YDL145C_MUCL42920 | rna-NM_001180205.1_MUCL42920 | cds-NP_010136.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:194494-198099:- | gene-YDL145C_NCIM3186 | rna-NM_001180205.1_NCIM3186 | cds-NP_010136.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:178108-181713:- | gene-YDL145C_NCYC1407 | rna-NM_001180205.1_NCYC1407 | cds-NP_010136.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:185350-188955:- | gene-YDL145C_PE2H3 | rna-NM_001180205.1_PE2H3 | cds-NP_010136.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:185354-188959:- | gene-YDL145C_PE2H4 | rna-NM_001180205.1_PE2H4 | cds-NP_010136.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:194571-198176:- | gene-YDL145C_S288C | rna-NM_001180205.1_S288C | cds-NP_010136.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000043.1:60128-63733:- | gene-YDL145C_SA1 | rna-NM_001180205.1_SA1 | cds-NP_010136.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:195520-199125:- | gene-YDL145C_ThermosaccDry | rna-NM_001180205.1_ThermosaccDry | cds-NP_010136.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:196114-199719:- | gene-YDL145C_VR1 | rna-NM_001180205.1_VR1 | cds-NP_010136.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:193647-197252:- | gene-YDL145C_ZTW1 | rna-NM_001180205.1_ZTW1 | cds-NP_010136.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:195766-199371:- | gene-YDL145C_Sparadoxus | rna-NM_001180205.1_Sparadoxus | cds-NP_010136.1_Sparadoxus | 92.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |