Gene name: COG8
Reference locus (S288C): YML071C
Gene biotype: protein_coding
Description: Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments
Top 10 interactors (score): COG3 (0.999); COG6 (0.999); COG4 (0.999); COG1 (0.997); COG7 (0.997); COG2 (0.996); COG5 (0.996); VPS54 (0.974); GOS1 (0.974); TLG2 (0.973); VPS53 (0.973); VPS52 (0.967); YPT6 (0.956); TRS85 (0.95); YKT6 (0.918); SEC5 (0.916); ARL1 (0.909); RIC1 (0.896); SLY1 (0.885); EXO70 (0.885)
Homologues (species, bitscore): AT5G11980 (Arabidopsis thaliana, 50.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:123482-125305:- | gene-YML071C_AKU4011 | rna-NM_001182430.1_AKU4011 | cds-NP_013640.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:350814-352637:+ | gene-YML071C_BG1 | rna-NM_001182430.1_BG1 | cds-NP_013640.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:129644-131467:- | gene-YML071C_Bruggeman | rna-NM_001182430.1_Bruggeman | cds-NP_013640.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:131318-133141:- | gene-YML071C_CAT1 | rna-NM_001182430.1_CAT1 | cds-NP_013640.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:123491-125314:- | gene-YML071C_CBS1585 | rna-NM_001182430.1_CBS1585 | cds-NP_013640.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:129412-131235:- | gene-YML071C_CBS436 | rna-NM_001182430.1_CBS436 | cds-NP_013640.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:124199-126022:- | gene-YML071C_CBS6412 | rna-NM_001182430.1_CBS6412 | cds-NP_013640.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:122674-124497:- | gene-YML071C_CBS6413 | rna-NM_001182430.1_CBS6413 | cds-NP_013640.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:124547-126295:- | gene-YML071C_CENPK1137D | rna-NM_001182430.1_CENPK1137D | cds-NP_013640.1_CENPK1137D | 95.4 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:123757-125580:- | gene-YML071C_EthanolRed | rna-NM_001182430.1_EthanolRed | cds-NP_013640.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:124264-126087:- | gene-YML071C_FaliES1 | rna-NM_001182430.1_FaliES1 | cds-NP_013640.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000366.1:31004-32827:+ | gene-YML071C_JAY291 | rna-NM_001182430.1_JAY291 | cds-NP_013640.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:128174-129997:- | gene-YML071C_MUCL30387 | rna-NM_001182430.1_MUCL30387 | cds-NP_013640.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:131349-133172:- | gene-YML071C_MUCL30388 | rna-NM_001182430.1_MUCL30388 | cds-NP_013640.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:123502-125325:- | gene-YML071C_MUCL39482 | rna-NM_001182430.1_MUCL39482 | cds-NP_013640.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:129282-131178:- | gene-YML071C_MUCL42920 | rna-NM_001182430.1_MUCL42920 | cds-NP_013640.1_MUCL42920 | 95.0 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:129703-131526:- | gene-YML071C_NCIM3186 | rna-NM_001182430.1_NCIM3186 | cds-NP_013640.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:124297-126120:- | gene-YML071C_NCYC1407 | rna-NM_001182430.1_NCYC1407 | cds-NP_013640.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:129672-131495:- | gene-YML071C_PE2H3 | rna-NM_001182430.1_PE2H3 | cds-NP_013640.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:129589-131412:- | gene-YML071C_PE2H4 | rna-NM_001182430.1_PE2H4 | cds-NP_013640.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:129749-131572:- | gene-YML071C_S288C | rna-NM_001182430.1_S288C | cds-NP_013640.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:52672-54495:+ | gene-YML071C_SA1 | rna-NM_001182430.1_SA1 | cds-NP_013640.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:123556-125379:- | gene-YML071C_ThermosaccDry | rna-NM_001182430.1_ThermosaccDry | cds-NP_013640.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:127937-129760:- | gene-YML071C_VR1 | rna-NM_001182430.1_VR1 | cds-NP_013640.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:103091-104914:- | gene-YML071C_ZTW1 | rna-NM_001182430.1_ZTW1 | cds-NP_013640.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:134342-136141:- | gene-YML071C_Sparadoxus | rna-NM_001182430.1_Sparadoxus | cds-NP_013640.1_Sparadoxus | 82.6 | 96.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |