Gene name: COG6
Reference locus (S288C): YNL041C
Gene biotype: protein_coding
Description: Conserved oligomeric golgi complex subunit 6; Component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments
Top 10 interactors (score): COG3 (0.999); COG4 (0.999); COG8 (0.999); COG1 (0.998); COG5 (0.997); COG2 (0.996); COG7 (0.995); VPS53 (0.971); GOS1 (0.963); YPT6 (0.958); VPS54 (0.949); VPS52 (0.945); SED5 (0.943); TLG2 (0.938); TRS85 (0.912); TLG1 (0.894); YPT1 (0.893); EXO84 (0.875); YKT6 (0.873); SLY1 (0.868)
Homologues (species, bitscore): COG6 (Homo sapiens, 72.4); Cog6 (Mus musculus, 69.7); cog6 (Danio rerio, 73.6); cog6 (Xenopus tropicalis, 80.5); CG1968 (Drosophila melanogaster, 72.4); cogc-6 (Caenorhabditis elegans, 50.1); AT1G31780 (Arabidopsis thaliana, 80.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:536926-539445:- | gene-YNL041C_AKU4011 | rna-NM_001182880.1_AKU4011 | cds-NP_014357.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:440877-443396:- | gene-YNL041C_BG1 | rna-NM_001182880.1_BG1 | cds-NP_014357.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:554287-556806:- | gene-YNL041C_Bruggeman | rna-NM_001182880.1_Bruggeman | cds-NP_014357.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:590589-593108:- | gene-YNL041C_CAT1 | rna-NM_001182880.1_CAT1 | cds-NP_014357.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:537596-540115:- | gene-YNL041C_CBS1585 | rna-NM_001182880.1_CBS1585 | cds-NP_014357.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:605837-608356:- | gene-YNL041C_CBS436 | rna-NM_001182880.1_CBS436 | cds-NP_014357.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:532689-535208:- | gene-YNL041C_CBS6412 | rna-NM_001182880.1_CBS6412 | cds-NP_014357.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:534007-536526:- | gene-YNL041C_CBS6413 | rna-NM_001182880.1_CBS6413 | cds-NP_014357.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:543054-545573:- | gene-YNL041C_CENPK1137D | rna-NM_001182880.1_CENPK1137D | cds-NP_014357.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:539739-542258:- | gene-YNL041C_EthanolRed | rna-NM_001182880.1_EthanolRed | cds-NP_014357.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:530522-533041:- | gene-YNL041C_FaliES1 | rna-NM_001182880.1_FaliES1 | cds-NP_014357.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000040.1:45310-47829:- | gene-YNL041C_JAY291 | rna-NM_001182880.1_JAY291 | cds-NP_014357.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:551275-553794:- | gene-YNL041C_MUCL30387 | rna-NM_001182880.1_MUCL30387 | cds-NP_014357.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:579785-582304:- | gene-YNL041C_MUCL30388 | rna-NM_001182880.1_MUCL30388 | cds-NP_014357.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:535013-537532:- | gene-YNL041C_MUCL39482 | rna-NM_001182880.1_MUCL39482 | cds-NP_014357.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:539080-541598:- | gene-YNL041C_MUCL42920 | rna-NM_001182880.1_MUCL42920 | cds-NP_014357.1_MUCL42920 | 99.6 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:549437-551956:- | gene-YNL041C_NCIM3186 | rna-NM_001182880.1_NCIM3186 | cds-NP_014357.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:537064-539583:- | gene-YNL041C_NCYC1407 | rna-NM_001182880.1_NCYC1407 | cds-NP_014357.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:540227-542746:- | gene-YNL041C_PE2H3 | rna-NM_001182880.1_PE2H3 | cds-NP_014357.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:535302-537821:- | gene-YNL041C_PE2H4 | rna-NM_001182880.1_PE2H4 | cds-NP_014357.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:549468-551987:- | gene-YNL041C_S288C | rna-NM_001182880.1_S288C | cds-NP_014357.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000024.1:128152-130671:- | gene-YNL041C_SA1 | rna-NM_001182880.1_SA1 | cds-NP_014357.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:531148-533667:- | gene-YNL041C_ThermosaccDry | rna-NM_001182880.1_ThermosaccDry | cds-NP_014357.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:550188-552707:- | gene-YNL041C_VR1 | rna-NM_001182880.1_VR1 | cds-NP_014357.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:440470-442989:- | gene-YNL041C_ZTW1 | rna-NM_001182880.1_ZTW1 | cds-NP_014357.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:546099-548618:- | gene-YNL041C_Sparadoxus | rna-NM_001182880.1_Sparadoxus | cds-NP_014357.1_Sparadoxus | 88.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |