Gene name: COG4
Reference locus (S288C): YPR105C
Gene biotype: protein_coding
Description: Conserved oligomeric golgi complex subunit 4; Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments
Top 10 interactors (score): COG2 (0.999); COG3 (0.999); COG8 (0.999); COG6 (0.999); COG1 (0.998); SLY1 (0.997); COG5 (0.995); COG7 (0.989); VPS53 (0.983); VPS54 (0.982); SED5 (0.972); VPS52 (0.945); TIP20 (0.911); YKT6 (0.899); SEC6 (0.897); GOS1 (0.89); EXO70 (0.88); BET1 (0.876); SEC22 (0.874); ATG17 (0.868)
Homologues (species, bitscore): COG4 (Homo sapiens, 85.1); Cog4 (Mus musculus, 83.6); cog4 (Danio rerio, 86.3); cog4 (Xenopus tropicalis, 88.2); CG7456 (Drosophila melanogaster, 86.7); cogc-4 (Caenorhabditis elegans, 63.5); AT4G01400 (Arabidopsis thaliana, 76.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:708820-711405:- | gene-YPR105C_AKU4011 | rna-NM_001184202.1_AKU4011 | cds-NP_015430.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:186438-189023:+ | gene-YPR105C_BG1 | rna-NM_001184202.1_BG1 | cds-NP_015430.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:786829-789414:- | gene-YPR105C_Bruggeman | rna-NM_001184202.1_Bruggeman | cds-NP_015430.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:831129-833714:- | gene-YPR105C_CAT1 | rna-NM_001184202.1_CAT1 | cds-NP_015430.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:713077-715662:- | gene-YPR105C_CBS1585 | rna-NM_001184202.1_CBS1585 | cds-NP_015430.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:727371-729956:- | gene-YPR105C_CBS436 | rna-NM_001184202.1_CBS436 | cds-NP_015430.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:715313-717898:- | gene-YPR105C_CBS6412 | rna-NM_001184202.1_CBS6412 | cds-NP_015430.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:710034-712619:- | gene-YPR105C_CBS6413 | rna-NM_001184202.1_CBS6413 | cds-NP_015430.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:736969-739554:- | gene-YPR105C_CENPK1137D | rna-NM_001184202.1_CENPK1137D | cds-NP_015430.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1035434-1038019:- | gene-YPR105C_EthanolRed | rna-NM_001184202.1_EthanolRed | cds-NP_015430.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:714981-717566:- | gene-YPR105C_FaliES1 | rna-NM_001184202.1_FaliES1 | cds-NP_015430.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000436.1:5740-8325:- | gene-YPR105C_JAY291 | rna-NM_001184202.1_JAY291 | cds-NP_015430.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:728087-730672:- | gene-YPR105C_MUCL30387 | rna-NM_001184202.1_MUCL30387 | cds-NP_015430.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:726777-729362:- | gene-YPR105C_MUCL30388 | rna-NM_001184202.1_MUCL30388 | cds-NP_015430.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:705584-708169:- | gene-YPR105C_MUCL39482 | rna-NM_001184202.1_MUCL39482 | cds-NP_015430.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:768679-771264:- | gene-YPR105C_MUCL42920 | rna-NM_001184202.1_MUCL42920 | cds-NP_015430.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:736967-739552:- | gene-YPR105C_NCIM3186 | rna-NM_001184202.1_NCIM3186 | cds-NP_015430.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:714178-716763:- | gene-YPR105C_NCYC1407 | rna-NM_001184202.1_NCYC1407 | cds-NP_015430.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:720415-723000:- | gene-YPR105C_PE2H3 | rna-NM_001184202.1_PE2H3 | cds-NP_015430.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:720063-722648:- | gene-YPR105C_PE2H4 | rna-NM_001184202.1_PE2H4 | cds-NP_015430.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:736984-739569:- | gene-YPR105C_S288C | rna-NM_001184202.1_S288C | cds-NP_015430.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000028.1:35103-37688:- | gene-YPR105C_SA1 | rna-NM_001184202.1_SA1 | cds-NP_015430.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:714426-717011:- | gene-YPR105C_ThermosaccDry | rna-NM_001184202.1_ThermosaccDry | cds-NP_015430.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:731082-733667:- | gene-YPR105C_VR1 | rna-NM_001184202.1_VR1 | cds-NP_015430.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:713476-716061:- | gene-YPR105C_ZTW1 | rna-NM_001184202.1_ZTW1 | cds-NP_015430.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:714405-716990:- | gene-YPR105C_Sparadoxus | rna-NM_001184202.1_Sparadoxus | cds-NP_015430.1_Sparadoxus | 89.4 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |