Gene name: COG1
Reference locus (S288C): YGL223C
Gene biotype: protein_coding
Description: Essential component of the conserved oligomeric Golgi complex; a cytosolic tethering complex (Cog1p through Cog8p) that functions in protein trafficking to mediate fusion of transport vesicles to Golgi compartments
Top 10 interactors (score): COG2 (0.999); COG4 (0.998); COG6 (0.998); COG7 (0.998); COG3 (0.998); COG8 (0.997); COG5 (0.994); SED5 (0.693); COY1 (0.661); TIP20 (0.651); DSL1 (0.619); VRG4 (0.617); SEC21 (0.614); BET1 (0.602); SEC13 (0.595); ATG17 (0.594); SLY1 (0.592); SDT1 (0.572); EXO70 (0.568); YFR045W (0.562)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:80386-81639:- | gene-YGL223C_AKU4011 | rna-NM_001181088.1_AKU4011 | cds-NP_011292.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:73530-74783:- | gene-YGL223C_BG1 | rna-NM_001181088.1_BG1 | cds-NP_011292.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:80971-82224:- | gene-YGL223C_Bruggeman | rna-NM_001181088.1_Bruggeman | cds-NP_011292.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:79651-80904:- | gene-YGL223C_CAT1 | rna-NM_001181088.1_CAT1 | cds-NP_011292.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:84698-85951:- | gene-YGL223C_CBS1585 | rna-NM_001181088.1_CBS1585 | cds-NP_011292.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:80334-81587:- | gene-YGL223C_CBS436 | rna-NM_001181088.1_CBS436 | cds-NP_011292.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:71883-73136:- | gene-YGL223C_CBS6412 | rna-NM_001181088.1_CBS6412 | cds-NP_011292.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:78536-79789:- | gene-YGL223C_CBS6413 | rna-NM_001181088.1_CBS6413 | cds-NP_011292.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:79124-80377:- | gene-YGL223C_CENPK1137D | rna-NM_001181088.1_CENPK1137D | cds-NP_011292.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:71249-72502:- | gene-YGL223C_EthanolRed | rna-NM_001181088.1_EthanolRed | cds-NP_011292.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:72076-73329:- | gene-YGL223C_FaliES1 | rna-NM_001181088.1_FaliES1 | cds-NP_011292.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000328.1:181-1434:+ | gene-YGL223C_JAY291 | rna-NM_001181088.1_JAY291 | cds-NP_011292.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:80897-82150:- | gene-YGL223C_MUCL30387 | rna-NM_001181088.1_MUCL30387 | cds-NP_011292.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:83075-84328:- | gene-YGL223C_MUCL30388 | rna-NM_001181088.1_MUCL30388 | cds-NP_011292.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:81264-82517:- | gene-YGL223C_MUCL39482 | rna-NM_001181088.1_MUCL39482 | cds-NP_011292.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:84379-85632:- | gene-YGL223C_MUCL42920 | rna-NM_001181088.1_MUCL42920 | cds-NP_011292.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:79112-80365:- | gene-YGL223C_NCIM3186 | rna-NM_001181088.1_NCIM3186 | cds-NP_011292.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:72989-74242:- | gene-YGL223C_NCYC1407 | rna-NM_001181088.1_NCYC1407 | cds-NP_011292.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:75817-77070:- | gene-YGL223C_PE2H3 | rna-NM_001181088.1_PE2H3 | cds-NP_011292.1_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:75365-76618:- | gene-YGL223C_PE2H4 | rna-NM_001181088.1_PE2H4 | cds-NP_011292.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:79112-80365:- | gene-YGL223C_S288C | rna-NM_001181088.1_S288C | cds-NP_011292.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:294971-296224:+ | gene-YGL223C_SA1 | rna-NM_001181088.1_SA1 | cds-NP_011292.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:72364-73617:- | gene-YGL223C_ThermosaccDry | rna-NM_001181088.1_ThermosaccDry | cds-NP_011292.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:80259-81512:- | gene-YGL223C_VR1 | rna-NM_001181088.1_VR1 | cds-NP_011292.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:71402-72655:- | gene-YGL223C_ZTW1 | rna-NM_001181088.1_ZTW1 | cds-NP_011292.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:78457-79710:- | gene-YGL223C_Sparadoxus | rna-NM_001181088.1_Sparadoxus | cds-NP_011292.1_Sparadoxus | 85.9 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |