COB (Q0105)

Gene profile

Gene name: COB
Reference locus (S288C): Q0105
Gene biotype: protein_coding

Description: Cytochrome b; mitochondrially encoded subunit of the ubiquinol-cytochrome c reductase complex which includes Cobp, Rip1p, Cyt1p, Cor1p, Qcr2p, Qcr6p, Qcr7p, Qcr8p, Qcr9p, and Qcr10p

Top 10 interactors (score): COX3 (0.999); RIP1 (0.999); COX1 (0.999); QCR6 (0.999); CYT1 (0.999); QCR8 (0.999); QCR9 (0.999); ATP6 (0.999); COX2 (0.999); QCR7 (0.999); COX12 (0.999); QCR2 (0.999); COR1 (0.998); COX13 (0.996); COX6 (0.994); COX4 (0.993); CYC1 (0.992); CYC7 (0.99); COX7 (0.989); COX5A (0.986)

Homologues (species, bitscore): MT-CYB (Homo sapiens, 394.4); mt-Cytb (Mus musculus, 392.9); CYTB (Danio rerio, 412.1); CYTB (Xenopus tropicalis, 400.6); mt:Cyt-b (Drosophila melanogaster, 391.7); CYTB (Caenorhabditis elegans, 265.4); cob (Arabidopsis thaliana, 405.2)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser

Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia MBVO01000055.1:27183-32158:+ gene-Q0105_AKU4011 rna-Q0105_AKU4011 cds-NP_009315.1_AKU4011 97.9 98.2 Unannotated 1 1 0 Unknown False False False False
Bruggeman GCA_001738585.1 Bread Not Applicable MBVY01000033.1:34098-41341:+ gene-Q0105_Bruggeman rna-Q0105_Bruggeman cds-NP_009315.1_Bruggeman 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
CAT1 GCA_001738705.1 Bioethanol South America MBWC01000376.1:26521-31891:+ gene-Q0105_CAT1 rna-Q0105_CAT1 cds-NP_009315.1_CAT1 98.1 98.2 Unannotated 1 1 0 Unknown False False False False
CBS1585 GCA_001738375.1 Sake Asia MBVS01000067.1:27347-31397:+ gene-Q0105_CBS1585 rna-Q0105_CBS1585 cds-NP_009315.1_CBS1585 79.0 85.6 Unannotated 1 1 0 Unknown False False False False
CBS436 GCA_001738355.1 Sake Asia MBVR01000053.1:31907-39229:+ gene-Q0105_CBS436 rna-Q0105_CBS436 cds-NP_009315.1_CBS436 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
CBS6412 GCA_001738345.1 Sake Asia MBVQ01000062.1:24320-29251:+ gene-Q0105_CBS6412 rna-Q0105_CBS6412 cds-NP_009315.1_CBS6412 98.0 98.2 Unannotated 1 1 0 Unknown False False False False
CBS6413 GCA_001738265.1 Sake Asia MBVP01000101.1:58213-65288:+ gene-Q0105_CBS6413 rna-Q0105_CBS6413 cds-NP_009315.1_CBS6413 99.7 100.0 Unannotated 1 1 0 Unknown False False False False
EthanolRed GCA_001738615.1 Bioethanol Asia MBWB01000074.1:23552-27184:+ gene-Q0105_EthanolRed rna-Q0105_EthanolRed cds-NP_009315.1_EthanolRed 92.8 93.1 Unannotated 1 1 0 Unknown False False False False
FaliES1 GCA_001738715.1 Bioethanol Asia MBWD01000016.1:31015-34330:+ gene-Q0105_FaliES1 rna-Q0105_FaliES1 cds-NP_009315.1_FaliES1 92.8 93.1 Unannotated 1 1 0 Unknown False False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000360.1:1410-4097:+ gene-Q0105_JAY291 rna-Q0105_JAY291 cds-NP_009315.1_JAY291 43.2 43.6 Unannotated 1 1 0 Unknown False False False False
MUCL30387 GCA_001738515.1 Bread Europe MBVX01000168.1:30700-38180:+ gene-Q0105_MUCL30387 rna-Q0105_MUCL30387 cds-NP_009315.1_MUCL30387 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
MUCL30388 GCA_001738495.1 Bread Europe MBVW01000208.1:33381-40490:+ gene-Q0105_MUCL30388 rna-Q0105_MUCL30388 cds-NP_009315.1_MUCL30388 74.0 74.0 Unannotated 1 1 0 Unknown False False False False
MUCL39482 GCA_001738235.1 Sake Asia MBVN01000090.1:21354-21430:+ gene-Q0105_MUCL39482 rna-Q0105_MUCL39482 cds-NP_009315.1_MUCL39482 6.6 6.6 Mismatch 1 1 0 Unknown False False False False
MUCL42920 GCA_001738485.1 Bread Europe MBVV01000309.1:33000-40188:+ gene-Q0105_MUCL42920 rna-Q0105_MUCL42920 cds-NP_009315.1_MUCL42920 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011826.1:36540-43647:+ gene-Q0105_NCIM3186 rna-Q0105_NCIM3186 cds-NP_009315.1_NCIM3186 88.7 88.9 Unannotated 1 1 0 Unknown False False False False
NCYC1407 GCA_001738225.1 Sake Asia MBVM01000021.1:33599-38539:+ gene-Q0105_NCYC1407 rna-Q0105_NCYC1407 cds-NP_009315.1_NCYC1407 98.1 98.2 Unannotated 1 1 0 Unknown False False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994156.1:29501-36775:+ gene-Q0105_PE2H3 rna-Q0105_PE2H3 cds-NP_009315.1_PE2H3 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999888.1:29501-36775:+ gene-Q0105_PE2H4 rna-Q0105_PE2H4 cds-NP_009315.1_PE2H4 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001224.1:36540-43647:+ gene-Q0105_S288C rna-Q0105_S288C cds-NP_009315.1_S288C 100.0 100.0 Unannotated 1 1 0 Unknown False False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000049.1:70337-77599:- gene-Q0105_SA1 rna-Q0105_SA1 cds-NP_009315.1_SA1 99.9 100.0 Unannotated 1 1 0 Unknown False False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia MBWA01000010.1:27947-31264:+ gene-Q0105_ThermosaccDry rna-Q0105_ThermosaccDry cds-NP_009315.1_ThermosaccDry 92.8 93.1 Unannotated 1 1 0 Unknown False False False False
VR1 GCA_001738595.1 Bioethanol South America MBVZ01000293.1:31480-38758:+ gene-Q0105_VR1 rna-Q0105_VR1 cds-NP_009315.1_VR1 99.4 100.0 Unannotated 1 1 0 Unknown False False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_018044.1:42166-47061:+ gene-Q0105_Sparadoxus rna-Q0105_Sparadoxus cds-NP_009315.1_Sparadoxus 73.9 85.4 Unannotated 1 1 0 Unknown False False False False

Additional files