Gene name: CNL1
Reference locus (S288C): YDR357C
Gene biotype: protein_coding
Description: Subunit of the BLOC-1 complex involved in endosomal maturation; interacts with Msb3p; null mutant is sensitive to drug inducing secretion of vacuolar cargo; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; Belongs to the BLOC1S4 family
Top 10 interactors (score): BLI1 (0.998); KXD1 (0.998); VAB2 (0.997); SNN1 (0.996); BLS1 (0.989); MSB3 (0.78); TMS1 (0.745); VPS21 (0.732); SNA2 (0.71); TVP38 (0.671); VPS73 (0.653); LDB18 (0.62); CET1 (0.612); YGL199C (0.612); TDA5 (0.612); VPS41 (0.591); AAD4 (0.573); EOS1 (0.572); GVP36 (0.57); TED1 (0.567)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1135264-1135632:- | gene-YDR357C_AKU4011 | rna-NM_001180665.1_AKU4011 | cds-NP_010644.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:13812-14180:- | gene-YDR357C_BG1 | rna-NM_001180665.1_BG1 | cds-NP_010644.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1165917-1166285:- | gene-YDR357C_Bruggeman | rna-NM_001180665.1_Bruggeman | cds-NP_010644.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1144506-1144874:- | gene-YDR357C_CAT1 | rna-NM_001180665.1_CAT1 | cds-NP_010644.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1129981-1130349:- | gene-YDR357C_CBS1585 | rna-NM_001180665.1_CBS1585 | cds-NP_010644.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1148562-1148930:- | gene-YDR357C_CBS436 | rna-NM_001180665.1_CBS436 | cds-NP_010644.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1126241-1126609:- | gene-YDR357C_CBS6412 | rna-NM_001180665.1_CBS6412 | cds-NP_010644.1_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1148131-1148499:- | gene-YDR357C_CBS6413 | rna-NM_001180665.1_CBS6413 | cds-NP_010644.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1187845-1188213:- | gene-YDR357C_CENPK1137D | rna-NM_001180665.1_CENPK1137D | cds-NP_010644.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1139666-1140034:- | gene-YDR357C_EthanolRed | rna-NM_001180665.1_EthanolRed | cds-NP_010644.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1142949-1143317:- | gene-YDR357C_FaliES1 | rna-NM_001180665.1_FaliES1 | cds-NP_010644.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000057.1:47756-48124:+ | gene-YDR357C_JAY291 | rna-NM_001180665.1_JAY291 | cds-NP_010644.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1149214-1149582:- | gene-YDR357C_MUCL30387 | rna-NM_001180665.1_MUCL30387 | cds-NP_010644.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1131821-1132189:- | gene-YDR357C_MUCL30388 | rna-NM_001180665.1_MUCL30388 | cds-NP_010644.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1121515-1121883:- | gene-YDR357C_MUCL39482 | rna-NM_001180665.1_MUCL39482 | cds-NP_010644.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1063448-1063816:- | gene-YDR357C_MUCL42920 | rna-NM_001180665.1_MUCL42920 | cds-NP_010644.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1189122-1189490:- | gene-YDR357C_NCIM3186 | rna-NM_001180665.1_NCIM3186 | cds-NP_010644.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1135188-1135556:- | gene-YDR357C_NCYC1407 | rna-NM_001180665.1_NCYC1407 | cds-NP_010644.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1145615-1145983:- | gene-YDR357C_PE2H3 | rna-NM_001180665.1_PE2H3 | cds-NP_010644.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1151200-1151568:- | gene-YDR357C_PE2H4 | rna-NM_001180665.1_PE2H4 | cds-NP_010644.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1189199-1189567:- | gene-YDR357C_S288C | rna-NM_001180665.1_S288C | cds-NP_010644.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000072.1:13893-14261:- | gene-YDR357C_SA1 | rna-NM_001180665.1_SA1 | cds-NP_010644.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1147230-1147598:- | gene-YDR357C_ThermosaccDry | rna-NM_001180665.1_ThermosaccDry | cds-NP_010644.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:574579-574947:- | gene-YDR357C_VR1 | rna-NM_001180665.1_VR1 | cds-NP_010644.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:190064-190432:- | gene-YDR357C_ZTW1 | rna-NM_001180665.1_ZTW1 | cds-NP_010644.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1141156-1141524:- | gene-YDR357C_Sparadoxus | rna-NM_001180665.1_Sparadoxus | cds-NP_010644.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |