Gene name: CNE1
Reference locus (S288C): YAL058W
Gene biotype: protein_coding
Description: Calnexin; integral membrane ER chaperone involved in folding and quality control of glycoproteins; chaperone activity is inhibited by Mpd1p, with which Cne1p interacts; 24% identical to mammalian calnexin; Ca+ binding not yet shown in yeast
Top 10 interactors (score): PDI1 (0.999); KAR2 (0.999); WBP1 (0.998); SEC61 (0.996); KRE5 (0.993); CDC48 (0.993); OST1 (0.993); ROT2 (0.993); SEC63 (0.989); LHS1 (0.988); CWH41 (0.987); SEC4 (0.98); SEC62 (0.97); EUG1 (0.97); ERD2 (0.968); OST3 (0.966); YOS9 (0.961); ALG8 (0.96); MNL1 (0.955); SBH2 (0.954)
Homologues (species, bitscore): CANX (Homo sapiens, 202.6); Clgn (Mus musculus, 200.3); canx (Danio rerio, 217.2); canx (Xenopus tropicalis, 196.1); Cnx99A (Drosophila melanogaster, 200.3); cnx-1 (Caenorhabditis elegans, 177.6); CNX1 (Arabidopsis thaliana, 179.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:22612-24120:+ | gene-YAL058W_AKU4011 | rna-NM_001178200.1_AKU4011 | cds-NP_009343.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:9676-11184:+ | gene-YAL058W_BG1 | rna-NM_001178200.1_BG1 | cds-NP_009343.1_BG1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:36817-38325:+ | gene-YAL058W_Bruggeman | rna-NM_001178200.1_Bruggeman | cds-NP_009343.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:23327-24835:+ | gene-YAL058W_CAT1 | rna-NM_001178200.1_CAT1 | cds-NP_009343.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:35632-37140:+ | gene-YAL058W_CBS1585 | rna-NM_001178200.1_CBS1585 | cds-NP_009343.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:35872-37380:+ | gene-YAL058W_CBS436 | rna-NM_001178200.1_CBS436 | cds-NP_009343.1_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:21775-23283:+ | gene-YAL058W_CBS6412 | rna-NM_001178200.1_CBS6412 | cds-NP_009343.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:33896-35404:+ | gene-YAL058W_CBS6413 | rna-NM_001178200.1_CBS6413 | cds-NP_009343.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:37520-39028:+ | gene-YAL058W_CENPK1137D | rna-NM_001178200.1_CENPK1137D | cds-NP_009343.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:24025-25533:+ | gene-YAL058W_EthanolRed | rna-NM_001178200.1_EthanolRed | cds-NP_009343.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:37968-39476:+ | gene-YAL058W_FaliES1 | rna-NM_001178200.1_FaliES1 | cds-NP_009343.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:9914-11422:+ | gene-YAL058W_JAY291 | rna-NM_001178200.1_JAY291 | cds-NP_009343.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:38571-40079:+ | gene-YAL058W_MUCL30387 | rna-NM_001178200.1_MUCL30387 | cds-NP_009343.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:35114-36622:+ | gene-YAL058W_MUCL30388 | rna-NM_001178200.1_MUCL30388 | cds-NP_009343.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:34435-35943:+ | gene-YAL058W_MUCL39482 | rna-NM_001178200.1_MUCL39482 | cds-NP_009343.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:36774-38282:+ | gene-YAL058W_MUCL42920 | rna-NM_001178200.1_MUCL42920 | cds-NP_009343.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:37341-38849:+ | gene-YAL058W_NCIM3186 | rna-NM_001178200.1_NCIM3186 | cds-NP_009343.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:22298-23806:+ | gene-YAL058W_NCYC1407 | rna-NM_001178200.1_NCYC1407 | cds-NP_009343.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:24176-25684:+ | gene-YAL058W_PE2H3 | rna-NM_001178200.1_PE2H3 | cds-NP_009343.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:23897-25405:+ | gene-YAL058W_PE2H4 | rna-NM_001178200.1_PE2H4 | cds-NP_009343.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:37464-38972:+ | gene-YAL058W_S288C | rna-NM_001178200.1_S288C | cds-NP_009343.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:12070-13578:+ | gene-YAL058W_SA1 | rna-NM_001178200.1_SA1 | cds-NP_009343.1_SA1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:38177-39685:+ | gene-YAL058W_ThermosaccDry | rna-NM_001178200.1_ThermosaccDry | cds-NP_009343.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:38931-40439:+ | gene-YAL058W_VR1 | rna-NM_001178200.1_VR1 | cds-NP_009343.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:9984-11492:+ | gene-YAL058W_ZTW1 | rna-NM_001178200.1_ZTW1 | cds-NP_009343.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:27688-29193:+ | gene-YAL058W_Sparadoxus | rna-NM_001178200.1_Sparadoxus | cds-NP_009343.1_Sparadoxus | 86.3 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |