Gene name: CMS1
Reference locus (S288C): YLR003C
Gene biotype: protein_coding
Description: Protein CMS1; Putative subunit of the 90S preribosome processome complex; overexpression rescues supressor mutant of mcm10; null mutant is viable; relocalizes from nucleus to cytoplasm upon DNA replication stress
Top 10 interactors (score): ROK1 (0.997); UTP30 (0.995); BFR2 (0.995); RRP7 (0.995); PNO1 (0.994); KRR1 (0.994); SPB4 (0.992); KRI1 (0.991); TSR1 (0.991); RRP36 (0.991); NOP7 (0.991); RRP12 (0.99); UTP6 (0.99); MRD1 (0.99); UTP22 (0.989); BMS1 (0.989); DBP8 (0.988); NOP9 (0.988); ENP2 (0.988); HAS1 (0.987)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:144840-145709:- | gene-YLR003C_AKU4011 | rna-NM_001181890.1_AKU4011 | cds-NP_013103.1_AKU4011 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:108044-108919:- | gene-YLR003C_BG1 | rna-NM_001181890.1_BG1 | cds-NP_013103.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:155206-156081:- | gene-YLR003C_Bruggeman | rna-NM_001181890.1_Bruggeman | cds-NP_013103.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:155525-156400:- | gene-YLR003C_CAT1 | rna-NM_001181890.1_CAT1 | cds-NP_013103.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:152439-153308:- | gene-YLR003C_CBS1585 | rna-NM_001181890.1_CBS1585 | cds-NP_013103.1_CBS1585 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:143058-143933:- | gene-YLR003C_CBS436 | rna-NM_001181890.1_CBS436 | cds-NP_013103.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:151211-152080:- | gene-YLR003C_CBS6412 | rna-NM_001181890.1_CBS6412 | cds-NP_013103.1_CBS6412 | 98.9 | 99.3 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:152705-153574:- | gene-YLR003C_CBS6413 | rna-NM_001181890.1_CBS6413 | cds-NP_013103.1_CBS6413 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:142124-142993:- | gene-YLR003C_CENPK1137D | rna-NM_001181890.1_CENPK1137D | cds-NP_013103.1_CENPK1137D | 99.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:144861-145730:- | gene-YLR003C_EthanolRed | rna-NM_001181890.1_EthanolRed | cds-NP_013103.1_EthanolRed | 99.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:144432-145301:- | gene-YLR003C_FaliES1 | rna-NM_001181890.1_FaliES1 | cds-NP_013103.1_FaliES1 | 99.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:10294-11169:+ | gene-YLR003C_JAY291 | rna-NM_001181890.1_JAY291 | cds-NP_013103.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:152562-153437:- | gene-YLR003C_MUCL30387 | rna-NM_001181890.1_MUCL30387 | cds-NP_013103.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:158259-159134:- | gene-YLR003C_MUCL30388 | rna-NM_001181890.1_MUCL30388 | cds-NP_013103.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:152910-153779:- | gene-YLR003C_MUCL39482 | rna-NM_001181890.1_MUCL39482 | cds-NP_013103.1_MUCL39482 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:152832-153707:- | gene-YLR003C_MUCL42920 | rna-NM_001181890.1_MUCL42920 | cds-NP_013103.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:156829-157704:- | gene-YLR003C_NCIM3186 | rna-NM_001181890.1_NCIM3186 | cds-NP_013103.1_NCIM3186 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:144513-145382:- | gene-YLR003C_NCYC1407 | rna-NM_001181890.1_NCYC1407 | cds-NP_013103.1_NCYC1407 | 98.9 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:150861-151730:- | gene-YLR003C_PE2H3 | rna-NM_001181890.1_PE2H3 | cds-NP_013103.1_PE2H3 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:150602-151471:- | gene-YLR003C_PE2H4 | rna-NM_001181890.1_PE2H4 | cds-NP_013103.1_PE2H4 | 99.0 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:156855-157730:- | gene-YLR003C_S288C | rna-NM_001181890.1_S288C | cds-NP_013103.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:60053-60928:- | gene-YLR003C_SA1 | rna-NM_001181890.1_SA1 | cds-NP_013103.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:144935-145804:- | gene-YLR003C_ThermosaccDry | rna-NM_001181890.1_ThermosaccDry | cds-NP_013103.1_ThermosaccDry | 99.2 | 99.3 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:158307-159182:- | gene-YLR003C_VR1 | rna-NM_001181890.1_VR1 | cds-NP_013103.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:144263-145138:- | gene-YLR003C_ZTW1 | rna-NM_001181890.1_ZTW1 | cds-NP_013103.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:152884-153759:- | gene-YLR003C_Sparadoxus | rna-NM_001181890.1_Sparadoxus | cds-NP_013103.1_Sparadoxus | 89.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |