Gene name: CMR3
Reference locus (S288C): YPR013C
Gene biotype: protein_coding
Description: Putative zinc finger protein; YPR013C is not an essential gene
Top 10 interactors (score): YGR067C (0.695); SLP1 (0.678); TDA9 (0.65); HGH1 (0.65); FYV7 (0.65); ZRT2 (0.614); ZRT1 (0.614); ZRT3 (0.576); SDD4 (0.575); TIR2 (0.563); ECM1 (0.561); ISW1 (0.557); FYV5 (0.554); YCP4 (0.553); GCD1 (0.546); ARR2 (0.538); BUD23 (0.532); DIE2 (0.525); SNX41 (0.525); YDR248C (0.525)
Homologues (species, bitscore): ZFP42 (Homo sapiens, 62.8); Zfp42 (Mus musculus, 63.9); klf9 (Danio rerio, 64.7); klf9 (Xenopus tropicalis, 62.4); phol (Drosophila melanogaster, 63.9); klf-1 (Caenorhabditis elegans, 58.9); YY1 (Arabidopsis thaliana, 56.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:556265-557218:- | gene-YPR013C_AKU4011 | rna-NM_001184110.1_AKU4011 | cds-NP_015338.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:339903-340856:+ | gene-YPR013C_BG1 | rna-NM_001184110.1_BG1 | cds-NP_015338.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:633949-634902:- | gene-YPR013C_Bruggeman | rna-NM_001184110.1_Bruggeman | cds-NP_015338.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:677351-678304:- | gene-YPR013C_CAT1 | rna-NM_001184110.1_CAT1 | cds-NP_015338.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:559952-560905:- | gene-YPR013C_CBS1585 | rna-NM_001184110.1_CBS1585 | cds-NP_015338.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:574348-575301:- | gene-YPR013C_CBS436 | rna-NM_001184110.1_CBS436 | cds-NP_015338.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:563701-564654:- | gene-YPR013C_CBS6412 | rna-NM_001184110.1_CBS6412 | cds-NP_015338.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:556412-557365:- | gene-YPR013C_CBS6413 | rna-NM_001184110.1_CBS6413 | cds-NP_015338.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:584607-585560:- | gene-YPR013C_CENPK1137D | rna-NM_001184110.1_CENPK1137D | cds-NP_015338.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:554197-555150:- | gene-YPR013C_EthanolRed | rna-NM_001184110.1_EthanolRed | cds-NP_015338.1_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:562028-562981:- | gene-YPR013C_FaliES1 | rna-NM_001184110.1_FaliES1 | cds-NP_015338.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000337.1:23853-24806:- | gene-YPR013C_JAY291 | rna-NM_001184110.1_JAY291 | cds-NP_015338.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:575170-576123:- | gene-YPR013C_MUCL30387 | rna-NM_001184110.1_MUCL30387 | cds-NP_015338.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:573572-574525:- | gene-YPR013C_MUCL30388 | rna-NM_001184110.1_MUCL30388 | cds-NP_015338.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:553190-554143:- | gene-YPR013C_MUCL39482 | rna-NM_001184110.1_MUCL39482 | cds-NP_015338.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:614296-615249:- | gene-YPR013C_MUCL42920 | rna-NM_001184110.1_MUCL42920 | cds-NP_015338.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:584615-585568:- | gene-YPR013C_NCIM3186 | rna-NM_001184110.1_NCIM3186 | cds-NP_015338.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:561139-562092:- | gene-YPR013C_NCYC1407 | rna-NM_001184110.1_NCYC1407 | cds-NP_015338.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:567884-568837:- | gene-YPR013C_PE2H3 | rna-NM_001184110.1_PE2H3 | cds-NP_015338.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:567499-568452:- | gene-YPR013C_PE2H4 | rna-NM_001184110.1_PE2H4 | cds-NP_015338.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:584632-585585:- | gene-YPR013C_S288C | rna-NM_001184110.1_S288C | cds-NP_015338.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:114721-115674:+ | gene-YPR013C_SA1 | rna-NM_001184110.1_SA1 | cds-NP_015338.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:561827-562780:- | gene-YPR013C_ThermosaccDry | rna-NM_001184110.1_ThermosaccDry | cds-NP_015338.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:578042-578995:- | gene-YPR013C_VR1 | rna-NM_001184110.1_VR1 | cds-NP_015338.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:561129-562082:- | gene-YPR013C_ZTW1 | rna-NM_001184110.1_ZTW1 | cds-NP_015338.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:561159-562112:- | gene-YPR013C_Sparadoxus | rna-NM_001184110.1_Sparadoxus | cds-NP_015338.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |