Gene name: CLU1
Reference locus (S288C): YMR012W
Gene biotype: protein_coding
Description: Clustered mitochondria protein 1; Subunit of the eukaryotic translation initiation factor 3 (eIF3); component of unknown function; deletion causes defects in mitochondrial organization but not in growth or translation initiation; can rescue cytokinesis and mitochondrial organization defects of the Dictyostelium cluA- mutant; eIF3 is also involved in programmed stop codon readthrough
Top 10 interactors (score): NIP1 (0.978); TIF35 (0.957); RPG1 (0.955); PRT1 (0.952); TIF34 (0.914); MEF1 (0.885); HCR1 (0.876); PUF3 (0.83); BRE5 (0.75); SUI2 (0.743); FUN12 (0.729); TIF5 (0.722); RRI2 (0.695); TUF1 (0.684); SAM50 (0.672); GPI17 (0.655); PET8 (0.652); TMA108 (0.648); TPA1 (0.611); LAT1 (0.605)
Homologues (species, bitscore): CLUH (Homo sapiens, 207.2); Cluh (Mus musculus, 218.8); cluha (Danio rerio, 219.9); cluh (Xenopus tropicalis, 189.1); clu (Drosophila melanogaster, 183.3); clu-1 (Caenorhabditis elegans, 196.1); NOXY38 (Arabidopsis thaliana, 160.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:340756-344589:+ | gene-YMR012W_AKU4011 | rna-NM_001182508.1_AKU4011 | cds-NP_013725.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:198283-202116:- | gene-YMR012W_BG1 | rna-NM_001182508.1_BG1 | cds-NP_013725.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:280697-284530:+ | gene-YMR012W_Bruggeman | rna-NM_001182508.1_Bruggeman | cds-NP_013725.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:283191-287024:+ | gene-YMR012W_CAT1 | rna-NM_001182508.1_CAT1 | cds-NP_013725.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:273697-277530:+ | gene-YMR012W_CBS1585 | rna-NM_001182508.1_CBS1585 | cds-NP_013725.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:279217-283050:+ | gene-YMR012W_CBS436 | rna-NM_001182508.1_CBS436 | cds-NP_013725.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:387101-390934:+ | gene-YMR012W_CBS6412 | rna-NM_001182508.1_CBS6412 | cds-NP_013725.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:272953-276786:+ | gene-YMR012W_CBS6413 | rna-NM_001182508.1_CBS6413 | cds-NP_013725.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:285864-289697:+ | gene-YMR012W_CENPK1137D | rna-NM_001182508.1_CENPK1137D | cds-NP_013725.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:273504-277337:+ | gene-YMR012W_EthanolRed | rna-NM_001182508.1_EthanolRed | cds-NP_013725.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:276687-280520:+ | gene-YMR012W_FaliES1 | rna-NM_001182508.1_FaliES1 | cds-NP_013725.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:156415-160248:- | gene-YMR012W_JAY291 | rna-NM_001182508.1_JAY291 | cds-NP_013725.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:278408-282241:+ | gene-YMR012W_MUCL30387 | rna-NM_001182508.1_MUCL30387 | cds-NP_013725.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:283083-286916:+ | gene-YMR012W_MUCL30388 | rna-NM_001182508.1_MUCL30388 | cds-NP_013725.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:273982-277815:+ | gene-YMR012W_MUCL39482 | rna-NM_001182508.1_MUCL39482 | cds-NP_013725.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:279767-283600:+ | gene-YMR012W_MUCL42920 | rna-NM_001182508.1_MUCL42920 | cds-NP_013725.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:291088-294921:+ | gene-YMR012W_NCIM3186 | rna-NM_001182508.1_NCIM3186 | cds-NP_013725.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:273899-277732:+ | gene-YMR012W_NCYC1407 | rna-NM_001182508.1_NCYC1407 | cds-NP_013725.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:279825-283658:+ | gene-YMR012W_PE2H3 | rna-NM_001182508.1_PE2H3 | cds-NP_013725.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:285920-289753:+ | gene-YMR012W_PE2H4 | rna-NM_001182508.1_PE2H4 | cds-NP_013725.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:291134-294967:+ | gene-YMR012W_S288C | rna-NM_001182508.1_S288C | cds-NP_013725.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000005.1:243302-247135:- | gene-YMR012W_SA1 | rna-NM_001182508.1_SA1 | cds-NP_013725.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:273756-277589:+ | gene-YMR012W_ThermosaccDry | rna-NM_001182508.1_ThermosaccDry | cds-NP_013725.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:277709-281542:+ | gene-YMR012W_VR1 | rna-NM_001182508.1_VR1 | cds-NP_013725.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:252802-256635:+ | gene-YMR012W_ZTW1 | rna-NM_001182508.1_ZTW1 | cds-NP_013725.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:286587-290420:+ | gene-YMR012W_Sparadoxus | rna-NM_001182508.1_Sparadoxus | cds-NP_013725.1_Sparadoxus | 91.3 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |