Gene name: CLP1
Reference locus (S288C): YOR250C
Gene biotype: protein_coding
Description: Component of the cleavage and polyadenylation factor I (CF I); CF 1, composed of the CF 1A complex (Rna14p, Rna15p, Clp1p, Pcf11p) and Hrp1, is involved in cleavage and polyadenylation of mRNA 3' ends; involved in both the endonucleolyitc cleavage and polyadenylation steps of mRNA 3'-end maturation and in gene looping which affects reinitiation of transcription
Top 10 interactors (score): PCF11 (0.999); RNA15 (0.999); RNA14 (0.999); YTH1 (0.998); YSH1 (0.995); CFT1 (0.992); FIP1 (0.991); CFT2 (0.979); SSU72 (0.976); SYC1 (0.975); PTA1 (0.961); MPE1 (0.947); HRP1 (0.938); TFC4 (0.918); SWD2 (0.916); REF2 (0.91); PFS2 (0.895); PAP1 (0.886); PTI1 (0.885); GLC7 (0.853)
Homologues (species, bitscore): CLP1 (Homo sapiens, 127.9); Clp1 (Mus musculus, 128.6); LOC565621 (Danio rerio, 135.6); clp1 (Xenopus tropicalis, 122.9); cbc (Drosophila melanogaster, 126.3); clpf-1 (Caenorhabditis elegans, 132.5); CLPS3 (Arabidopsis thaliana, 155.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:791741-793078:- | gene-YOR250C_AKU4011 | rna-NM_001183669.1_AKU4011 | cds-NP_014893.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:193784-195121:- | gene-YOR250C_BG1 | rna-NM_001183669.1_BG1 | cds-NP_014893.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:777209-778546:- | gene-YOR250C_Bruggeman | rna-NM_001183669.1_Bruggeman | cds-NP_014893.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:777862-779199:- | gene-YOR250C_CAT1 | rna-NM_001183669.1_CAT1 | cds-NP_014893.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:774730-776067:- | gene-YOR250C_CBS1585 | rna-NM_001183669.1_CBS1585 | cds-NP_014893.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:773427-774764:- | gene-YOR250C_CBS436 | rna-NM_001183669.1_CBS436 | cds-NP_014893.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:771849-773186:- | gene-YOR250C_CBS6412 | rna-NM_001183669.1_CBS6412 | cds-NP_014893.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:780489-781826:- | gene-YOR250C_CBS6413 | rna-NM_001183669.1_CBS6413 | cds-NP_014893.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:800734-802071:- | gene-YOR250C_CENPK1137D | rna-NM_001183669.1_CENPK1137D | cds-NP_014893.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:767858-769195:- | gene-YOR250C_EthanolRed | rna-NM_001183669.1_EthanolRed | cds-NP_014893.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:773257-774594:- | gene-YOR250C_FaliES1 | rna-NM_001183669.1_FaliES1 | cds-NP_014893.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:52233-53570:+ | gene-YOR250C_JAY291 | rna-NM_001183669.1_JAY291 | cds-NP_014893.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:781482-782819:- | gene-YOR250C_MUCL30387 | rna-NM_001183669.1_MUCL30387 | cds-NP_014893.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:788598-789935:- | gene-YOR250C_MUCL30388 | rna-NM_001183669.1_MUCL30388 | cds-NP_014893.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:782060-783397:- | gene-YOR250C_MUCL39482 | rna-NM_001183669.1_MUCL39482 | cds-NP_014893.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:791650-792987:- | gene-YOR250C_MUCL42920 | rna-NM_001183669.1_MUCL42920 | cds-NP_014893.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:800859-802196:- | gene-YOR250C_NCIM3186 | rna-NM_001183669.1_NCIM3186 | cds-NP_014893.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:782159-783496:- | gene-YOR250C_NCYC1407 | rna-NM_001183669.1_NCYC1407 | cds-NP_014893.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:781465-782802:- | gene-YOR250C_PE2H3 | rna-NM_001183669.1_PE2H3 | cds-NP_014893.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:791842-793179:- | gene-YOR250C_PE2H4 | rna-NM_001183669.1_PE2H4 | cds-NP_014893.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:800970-802307:- | gene-YOR250C_S288C | rna-NM_001183669.1_S288C | cds-NP_014893.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:210966-212303:- | gene-YOR250C_SA1 | rna-NM_001183669.1_SA1 | cds-NP_014893.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:772440-773777:- | gene-YOR250C_ThermosaccDry | rna-NM_001183669.1_ThermosaccDry | cds-NP_014893.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:835905-837242:- | gene-YOR250C_VR1 | rna-NM_001183669.1_VR1 | cds-NP_014893.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:505356-506693:- | gene-YOR250C_ZTW1 | rna-NM_001183669.1_ZTW1 | cds-NP_014893.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:778217-779554:- | gene-YOR250C_Sparadoxus | rna-NM_001183669.1_Sparadoxus | cds-NP_014893.1_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |