Gene name: CLC1
Reference locus (S288C): YGR167W
Gene biotype: protein_coding
Description: Clathrin light chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; regulates endocytic progression; thought to regulate clathrin function; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion
Top 10 interactors (score): SLA2 (0.999); CHC1 (0.999); APL3 (0.992); ENT3 (0.988); ENT5 (0.986); APS2 (0.98); END3 (0.977); EDE1 (0.975); PAN1 (0.974); LAS17 (0.974); YAP1801 (0.972); YAP1802 (0.968); ARP2 (0.965); BZZ1 (0.958); SWA2 (0.957); APM4 (0.957); APL1 (0.946); APM1 (0.944); APL2 (0.941); GGA2 (0.94)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:800206-800913:+ | gene-YGR167W_AKU4011 | rna-NM_001181296.3_AKU4011 | cds-NP_011683.3_AKU4011 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:78335-79036:+ | gene-YGR167W_BG1 | rna-NM_001181296.3_BG1 | cds-NP_011683.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:806137-806844:+ | gene-YGR167W_Bruggeman | rna-NM_001181296.3_Bruggeman | cds-NP_011683.3_Bruggeman | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:801987-802694:+ | gene-YGR167W_CAT1 | rna-NM_001181296.3_CAT1 | cds-NP_011683.3_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:800922-801629:+ | gene-YGR167W_CBS1585 | rna-NM_001181296.3_CBS1585 | cds-NP_011683.3_CBS1585 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:804818-805519:+ | gene-YGR167W_CBS436 | rna-NM_001181296.3_CBS436 | cds-NP_011683.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:792291-792998:+ | gene-YGR167W_CBS6412 | rna-NM_001181296.3_CBS6412 | cds-NP_011683.3_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:797786-798493:+ | gene-YGR167W_CBS6413 | rna-NM_001181296.3_CBS6413 | cds-NP_011683.3_CBS6413 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:832191-832892:+ | gene-YGR167W_CENPK1137D | rna-NM_001181296.3_CENPK1137D | cds-NP_011683.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:786796-787503:+ | gene-YGR167W_EthanolRed | rna-NM_001181296.3_EthanolRed | cds-NP_011683.3_EthanolRed | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:791187-791894:+ | gene-YGR167W_FaliES1 | rna-NM_001181296.3_FaliES1 | cds-NP_011683.3_FaliES1 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:33111-33812:+ | gene-YGR167W_JAY291 | rna-NM_001181296.3_JAY291 | cds-NP_011683.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:803627-804334:+ | gene-YGR167W_MUCL30387 | rna-NM_001181296.3_MUCL30387 | cds-NP_011683.3_MUCL30387 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:803326-804033:+ | gene-YGR167W_MUCL30388 | rna-NM_001181296.3_MUCL30388 | cds-NP_011683.3_MUCL30388 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:796497-797204:+ | gene-YGR167W_MUCL39482 | rna-NM_001181296.3_MUCL39482 | cds-NP_011683.3_MUCL39482 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:811456-812157:+ | gene-YGR167W_MUCL42920 | rna-NM_001181296.3_MUCL42920 | cds-NP_011683.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:832456-833157:+ | gene-YGR167W_NCIM3186 | rna-NM_001181296.3_NCIM3186 | cds-NP_011683.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:791605-792312:+ | gene-YGR167W_NCYC1407 | rna-NM_001181296.3_NCYC1407 | cds-NP_011683.3_NCYC1407 | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:810804-811505:+ | gene-YGR167W_PE2H3 | rna-NM_001181296.3_PE2H3 | cds-NP_011683.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:815914-816615:+ | gene-YGR167W_PE2H4 | rna-NM_001181296.3_PE2H4 | cds-NP_011683.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:832456-833157:+ | gene-YGR167W_S288C | rna-NM_001181296.3_S288C | cds-NP_011683.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:56106-56813:+ | gene-YGR167W_SA1 | rna-NM_001181296.3_SA1 | cds-NP_011683.3_SA1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:811698-812405:+ | gene-YGR167W_ThermosaccDry | rna-NM_001181296.3_ThermosaccDry | cds-NP_011683.3_ThermosaccDry | 98.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:915954-916655:+ | gene-YGR167W_VR1 | rna-NM_001181296.3_VR1 | cds-NP_011683.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:113142-113849:+ | gene-YGR167W_ZTW1 | rna-NM_001181296.3_ZTW1 | cds-NP_011683.3_ZTW1 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:802572-803276:+ | gene-YGR167W_Sparadoxus | rna-NM_001181296.3_Sparadoxus | cds-NP_011683.3_Sparadoxus | 89.3 | 99.1 | Verified | 1 | 1 | 1 | False | True | False | False | False |