Gene name: CLB6
Reference locus (S288C): YGR109C
Gene biotype: protein_coding
Description: S-phase entry cyclin-6; B-type cyclin involved in DNA replication during S phase; activates Cdc28p to promote initiation of DNA synthesis; functions in formation of mitotic spindles along with Clb3p and Clb4p; most abundant during late G1; CLB6 has a paralog, CLB5, that arose from the whole genome duplication
Top 10 interactors (score): CDC28 (0.999); CDC6 (0.993); SIC1 (0.988); CLB5 (0.985); MIH1 (0.965); KIN28 (0.964); CCL1 (0.96); SWE1 (0.943); TFB3 (0.939); CDC20 (0.921); CLN2 (0.875); YOX1 (0.874); SWI6 (0.864); MBP1 (0.862); SWI4 (0.862); CKS1 (0.832); APC1 (0.829); MCD1 (0.827); PHO85 (0.809); CDC27 (0.779)
Homologues (species, bitscore): CCNB1 (Homo sapiens, 157.5); Ccnb2 (Mus musculus, 153.3); ccnb2 (Danio rerio, 160.6); ccnb2 (Xenopus tropicalis, 157.9); CycB (Drosophila melanogaster, 141.4); cyb-1 (Caenorhabditis elegans, 110.5); CYCA2;1 (Arabidopsis thaliana, 151.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:690031-691173:- | gene-YGR109C_AKU4011 | rna-NM_001181238.3_AKU4011 | cds-NP_011623.3_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:125385-126527:- | gene-YGR109C_BG1 | rna-NM_001181238.3_BG1 | cds-NP_011623.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:691714-692856:- | gene-YGR109C_Bruggeman | rna-NM_001181238.3_Bruggeman | cds-NP_011623.3_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:689918-691060:- | gene-YGR109C_CAT1 | rna-NM_001181238.3_CAT1 | cds-NP_011623.3_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:691021-692163:- | gene-YGR109C_CBS1585 | rna-NM_001181238.3_CBS1585 | cds-NP_011623.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:692647-693789:- | gene-YGR109C_CBS436 | rna-NM_001181238.3_CBS436 | cds-NP_011623.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:682690-683832:- | gene-YGR109C_CBS6412 | rna-NM_001181238.3_CBS6412 | cds-NP_011623.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:687624-688766:- | gene-YGR109C_CBS6413 | rna-NM_001181238.3_CBS6413 | cds-NP_011623.3_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:705055-706197:- | gene-YGR109C_CENPK1137D | rna-NM_001181238.3_CENPK1137D | cds-NP_011623.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:677133-678275:- | gene-YGR109C_EthanolRed | rna-NM_001181238.3_EthanolRed | cds-NP_011623.3_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:680924-682066:- | gene-YGR109C_FaliES1 | rna-NM_001181238.3_FaliES1 | cds-NP_011623.3_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000114.1:683-1825:+ | gene-YGR109C_JAY291 | rna-NM_001181238.3_JAY291 | cds-NP_011623.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:688714-689856:- | gene-YGR109C_MUCL30387 | rna-NM_001181238.3_MUCL30387 | cds-NP_011623.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:691525-692667:- | gene-YGR109C_MUCL30388 | rna-NM_001181238.3_MUCL30388 | cds-NP_011623.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:686748-687890:- | gene-YGR109C_MUCL39482 | rna-NM_001181238.3_MUCL39482 | cds-NP_011623.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:696535-697677:- | gene-YGR109C_MUCL42920 | rna-NM_001181238.3_MUCL42920 | cds-NP_011623.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:705359-706501:- | gene-YGR109C_NCIM3186 | rna-NM_001181238.3_NCIM3186 | cds-NP_011623.3_NCIM3186 | 95.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:681441-682583:- | gene-YGR109C_NCYC1407 | rna-NM_001181238.3_NCYC1407 | cds-NP_011623.3_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:683609-684751:- | gene-YGR109C_PE2H3 | rna-NM_001181238.3_PE2H3 | cds-NP_011623.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:688728-689870:- | gene-YGR109C_PE2H4 | rna-NM_001181238.3_PE2H4 | cds-NP_011623.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:705359-706501:- | gene-YGR109C_S288C | rna-NM_001181238.3_S288C | cds-NP_011623.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:132031-133173:- | gene-YGR109C_SA1 | rna-NM_001181238.3_SA1 | cds-NP_011623.3_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:701304-702446:- | gene-YGR109C_ThermosaccDry | rna-NM_001181238.3_ThermosaccDry | cds-NP_011623.3_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:797796-798938:- | gene-YGR109C_VR1 | rna-NM_001181238.3_VR1 | cds-NP_011623.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:3699-4841:- | gene-YGR109C_ZTW1 | rna-NM_001181238.3_ZTW1 | cds-NP_011623.3_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:691744-692887:- | gene-YGR109C_Sparadoxus | rna-NM_001181238.3_Sparadoxus | cds-NP_011623.3_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |