Gene name: CIT3
Reference locus (S288C): YPR001W
Gene biotype: protein_coding
Description: Citrate synthase 3, mitochondrial; Dual specificity mitochondrial citrate and methylcitrate synthase; catalyzes the condensation of acetyl-CoA and oxaloacetate to form citrate and that of propionyl-CoA and oxaloacetate to form 2-methylcitrate
Top 10 interactors (score): CIT1 (0.999); ACS1 (0.997); MDH1 (0.994); MDH3 (0.993); ACO1 (0.993); IDH2 (0.993); MLS1 (0.989); ACO2 (0.988); FUM1 (0.987); PDH1 (0.987); MDH2 (0.987); LAT1 (0.984); ACS2 (0.979); ICL2 (0.972); PCK1 (0.963); IDH1 (0.962); DAL7 (0.961); LSC1 (0.96); PDB1 (0.959); CIT2 (0.958)
Homologues (species, bitscore): CS (Homo sapiens, 419.9); Cs (Mus musculus, 416.8); cs (Danio rerio, 426.0); cs (Xenopus tropicalis, 420.6); kdn (Drosophila melanogaster, 396.0); cts-1 (Caenorhabditis elegans, 393.3); CSY5 (Arabidopsis thaliana, 402.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:527839-529299:+ | gene-YPR001W_AKU4011 | rna-NM_001184098.1_AKU4011 | cds-NP_015325.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:367880-369340:- | gene-YPR001W_BG1 | rna-NM_001184098.1_BG1 | cds-NP_015325.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:604776-606236:+ | gene-YPR001W_Bruggeman | rna-NM_001184098.1_Bruggeman | cds-NP_015325.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:647522-648982:+ | gene-YPR001W_CAT1 | rna-NM_001184098.1_CAT1 | cds-NP_015325.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:532016-533476:+ | gene-YPR001W_CBS1585 | rna-NM_001184098.1_CBS1585 | cds-NP_015325.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:546100-547560:+ | gene-YPR001W_CBS436 | rna-NM_001184098.1_CBS436 | cds-NP_015325.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:535765-537225:+ | gene-YPR001W_CBS6412 | rna-NM_001184098.1_CBS6412 | cds-NP_015325.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:528476-529936:+ | gene-YPR001W_CBS6413 | rna-NM_001184098.1_CBS6413 | cds-NP_015325.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:556378-557838:+ | gene-YPR001W_CENPK1137D | rna-NM_001184098.1_CENPK1137D | cds-NP_015325.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:526263-527723:+ | gene-YPR001W_EthanolRed | rna-NM_001184098.1_EthanolRed | cds-NP_015325.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:534093-535553:+ | gene-YPR001W_FaliES1 | rna-NM_001184098.1_FaliES1 | cds-NP_015325.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000341.1:2463-3923:- | gene-YPR001W_JAY291 | rna-NM_001184098.1_JAY291 | cds-NP_015325.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:545731-547191:+ | gene-YPR001W_MUCL30387 | rna-NM_001184098.1_MUCL30387 | cds-NP_015325.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:544833-546293:+ | gene-YPR001W_MUCL30388 | rna-NM_001184098.1_MUCL30388 | cds-NP_015325.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:525256-526716:+ | gene-YPR001W_MUCL39482 | rna-NM_001184098.1_MUCL39482 | cds-NP_015325.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:584347-585807:+ | gene-YPR001W_MUCL42920 | rna-NM_001184098.1_MUCL42920 | cds-NP_015325.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:556360-557820:+ | gene-YPR001W_NCIM3186 | rna-NM_001184098.1_NCIM3186 | cds-NP_015325.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:532515-533975:+ | gene-YPR001W_NCYC1407 | rna-NM_001184098.1_NCYC1407 | cds-NP_015325.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:539209-540669:+ | gene-YPR001W_PE2H3 | rna-NM_001184098.1_PE2H3 | cds-NP_015325.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:538824-540284:+ | gene-YPR001W_PE2H4 | rna-NM_001184098.1_PE2H4 | cds-NP_015325.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:556377-557837:+ | gene-YPR001W_S288C | rna-NM_001184098.1_S288C | cds-NP_015325.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:53118-54578:+ | gene-YPR001W_SA1 | rna-NM_001184098.1_SA1 | cds-NP_015325.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:533892-535352:+ | gene-YPR001W_ThermosaccDry | rna-NM_001184098.1_ThermosaccDry | cds-NP_015325.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:549292-550752:+ | gene-YPR001W_VR1 | rna-NM_001184098.1_VR1 | cds-NP_015325.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:533199-534659:+ | gene-YPR001W_ZTW1 | rna-NM_001184098.1_ZTW1 | cds-NP_015325.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:532899-534357:+ | gene-YPR001W_Sparadoxus | rna-NM_001184098.1_Sparadoxus | cds-NP_015325.1_Sparadoxus | 89.9 | 99.8 | Verified | 1 | 1 | 0 | False | False | False | True | False |