Gene name: CIS1
Reference locus (S288C): YLR346C
Gene biotype: protein_coding
Description: Uncharacterized protein YLR346C, mitochondrial; Protein of unknown function found in mitochondria; expression is regulated by transcription factors involved in pleiotropic drug resistance, Pdr1p and Yrr1p; not an essential gene; YLR346C has a paralog, YGR035C, that arose from the whole genome duplication
Top 10 interactors (score): RTA1 (0.813); GTT2 (0.77); YML131W (0.76); YKL070W (0.744); RSB1 (0.734); YLL056C (0.716); AAD4 (0.697); GRE2 (0.689); PRM7 (0.613); YMR102C (0.599); YIM1 (0.574); FRM2 (0.573); EGO4 (0.572); AAD10 (0.57); MNT3 (0.569); YOR1 (0.564); ATF2 (0.56); AAD6 (0.53); PDR12 (0.529); PDR1 (0.526)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:771871-772176:- | gene-YLR346C_AKU4011 | rna-NM_001182235.1_AKU4011 | cds-NP_013450.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000048.1:3947-4252:- | gene-YLR346C_BG1 | rna-NM_001182235.1_BG1 | cds-NP_013450.1_BG1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:808632-808937:- | gene-YLR346C_Bruggeman | rna-NM_001182235.1_Bruggeman | cds-NP_013450.1_Bruggeman | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:805676-805981:- | gene-YLR346C_CAT1 | rna-NM_001182235.1_CAT1 | cds-NP_013450.1_CAT1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:806863-807168:- | gene-YLR346C_CBS1585 | rna-NM_001182235.1_CBS1585 | cds-NP_013450.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:791088-791393:- | gene-YLR346C_CBS436 | rna-NM_001182235.1_CBS436 | cds-NP_013450.1_CBS436 | 98.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:843861-844166:- | gene-YLR346C_CBS6412 | rna-NM_001182235.1_CBS6412 | cds-NP_013450.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:807790-808095:- | gene-YLR346C_CBS6413 | rna-NM_001182235.1_CBS6413 | cds-NP_013450.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:806902-807207:- | gene-YLR346C_CENPK1137D | rna-NM_001182235.1_CENPK1137D | cds-NP_013450.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:764423-764728:- | gene-YLR346C_EthanolRed | rna-NM_001182235.1_EthanolRed | cds-NP_013450.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:793230-793535:- | gene-YLR346C_FaliES1 | rna-NM_001182235.1_FaliES1 | cds-NP_013450.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000161.1:3826-4131:- | gene-YLR346C_JAY291 | rna-NM_001182235.1_JAY291 | cds-NP_013450.1_JAY291 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:806612-806917:- | gene-YLR346C_MUCL30387 | rna-NM_001182235.1_MUCL30387 | cds-NP_013450.1_MUCL30387 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:811958-812263:- | gene-YLR346C_MUCL30388 | rna-NM_001182235.1_MUCL30388 | cds-NP_013450.1_MUCL30388 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:808082-808387:- | gene-YLR346C_MUCL39482 | rna-NM_001182235.1_MUCL39482 | cds-NP_013450.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:803359-803664:- | gene-YLR346C_MUCL42920 | rna-NM_001182235.1_MUCL42920 | cds-NP_013450.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:822261-822566:- | gene-YLR346C_NCIM3186 | rna-NM_001182235.1_NCIM3186 | cds-NP_013450.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:817302-817607:- | gene-YLR346C_NCYC1407 | rna-NM_001182235.1_NCYC1407 | cds-NP_013450.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:804245-804550:- | gene-YLR346C_PE2H3 | rna-NM_001182235.1_PE2H3 | cds-NP_013450.1_PE2H3 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:803989-804294:- | gene-YLR346C_PE2H4 | rna-NM_001182235.1_PE2H4 | cds-NP_013450.1_PE2H4 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:822287-822592:- | gene-YLR346C_S288C | rna-NM_001182235.1_S288C | cds-NP_013450.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:226068-226373:+ | gene-YLR346C_SA1 | rna-NM_001182235.1_SA1 | cds-NP_013450.1_SA1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:796066-796371:- | gene-YLR346C_ThermosaccDry | rna-NM_001182235.1_ThermosaccDry | cds-NP_013450.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:809321-809626:- | gene-YLR346C_VR1 | rna-NM_001182235.1_VR1 | cds-NP_013450.1_VR1 | 98.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:133510-133815:- | gene-YLR346C_ZTW1 | rna-NM_001182235.1_ZTW1 | cds-NP_013450.1_ZTW1 | 99.3 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:782112-782417:- | gene-YLR346C_Sparadoxus | rna-NM_001182235.1_Sparadoxus | cds-NP_013450.1_Sparadoxus | 88.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |