Gene name: CIR1
Reference locus (S288C): YGR207C
Gene biotype: protein_coding
Description: Probable electron transfer flavoprotein subunit beta; Mitochondrial protein that interacts with frataxin (Yfh1p); putative ortholog of mammalian electron transfer flavoprotein complex subunit ETF-beta; may have a role in oxidative stress response
Top 10 interactors (score): AIM45 (0.999); CIR2 (0.999); POX1 (0.981); FPR2 (0.964); ATX1 (0.963); UBC12 (0.96); CFT1 (0.919); QCR6 (0.91); SIT1 (0.816); HSP10 (0.805); PKR1 (0.744); LSC1 (0.733); ELO3 (0.697); CFT2 (0.692); COX10 (0.689); CYC7 (0.684); CYC1 (0.684); FTR1 (0.672); RIM101 (0.671); CPR1 (0.666)
Homologues (species, bitscore): ETFB (Homo sapiens, 201.1); Etfb (Mus musculus, 225.7); etfb (Danio rerio, 221.5); etfb (Xenopus tropicalis, 220.3); CG7834 (Drosophila melanogaster, 221.5); F23C8.5 (Caenorhabditis elegans, 209.9); ETFBETA (Arabidopsis thaliana, 219.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:876360-877145:- | gene-YGR207C_AKU4011 | rna-NM_001181336.1_AKU4011 | cds-NP_011723.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:156743-157528:- | gene-YGR207C_BG1 | rna-NM_001181336.1_BG1 | cds-NP_011723.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:884562-885347:- | gene-YGR207C_Bruggeman | rna-NM_001181336.1_Bruggeman | cds-NP_011723.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:882554-883339:- | gene-YGR207C_CAT1 | rna-NM_001181336.1_CAT1 | cds-NP_011723.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:879798-880583:- | gene-YGR207C_CBS1585 | rna-NM_001181336.1_CBS1585 | cds-NP_011723.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:883151-883936:- | gene-YGR207C_CBS436 | rna-NM_001181336.1_CBS436 | cds-NP_011723.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:870670-871455:- | gene-YGR207C_CBS6412 | rna-NM_001181336.1_CBS6412 | cds-NP_011723.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:876729-877514:- | gene-YGR207C_CBS6413 | rna-NM_001181336.1_CBS6413 | cds-NP_011723.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:910555-911340:- | gene-YGR207C_CENPK1137D | rna-NM_001181336.1_CENPK1137D | cds-NP_011723.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:865179-865964:- | gene-YGR207C_EthanolRed | rna-NM_001181336.1_EthanolRed | cds-NP_011723.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:869570-870355:- | gene-YGR207C_FaliES1 | rna-NM_001181336.1_FaliES1 | cds-NP_011723.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000148.1:27296-28081:- | gene-YGR207C_JAY291 | rna-NM_001181336.1_JAY291 | cds-NP_011723.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:882047-882832:- | gene-YGR207C_MUCL30387 | rna-NM_001181336.1_MUCL30387 | cds-NP_011723.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:881731-882516:- | gene-YGR207C_MUCL30388 | rna-NM_001181336.1_MUCL30388 | cds-NP_011723.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:874874-875659:- | gene-YGR207C_MUCL39482 | rna-NM_001181336.1_MUCL39482 | cds-NP_011723.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:892423-893208:- | gene-YGR207C_MUCL42920 | rna-NM_001181336.1_MUCL42920 | cds-NP_011723.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:910843-911628:- | gene-YGR207C_NCIM3186 | rna-NM_001181336.1_NCIM3186 | cds-NP_011723.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:870530-871315:- | gene-YGR207C_NCYC1407 | rna-NM_001181336.1_NCYC1407 | cds-NP_011723.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:895138-895923:- | gene-YGR207C_PE2H3 | rna-NM_001181336.1_PE2H3 | cds-NP_011723.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:900248-901033:- | gene-YGR207C_PE2H4 | rna-NM_001181336.1_PE2H4 | cds-NP_011723.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:910843-911628:- | gene-YGR207C_S288C | rna-NM_001181336.1_S288C | cds-NP_011723.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000045.1:89763-90548:+ | gene-YGR207C_SA1 | rna-NM_001181336.1_SA1 | cds-NP_011723.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:890081-890866:- | gene-YGR207C_ThermosaccDry | rna-NM_001181336.1_ThermosaccDry | cds-NP_011723.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:994566-995351:- | gene-YGR207C_VR1 | rna-NM_001181336.1_VR1 | cds-NP_011723.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:191524-192309:- | gene-YGR207C_ZTW1 | rna-NM_001181336.1_ZTW1 | cds-NP_011723.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:882028-882813:- | gene-YGR207C_Sparadoxus | rna-NM_001181336.1_Sparadoxus | cds-NP_011723.1_Sparadoxus | 91.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |