Gene name: CIN4
Reference locus (S288C): YMR138W
Gene biotype: protein_coding
Description: GTP-binding protein involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl; regulated by the GTPase-activating protein, Cin2p, the human retinitis pigmentosa 2 (RP2) homolog
Top 10 interactors (score): CIN1 (0.999); PAC2 (0.979); ALF1 (0.971); CIN2 (0.947); RBL2 (0.929); TUB2 (0.917); YHL008C (0.813); PAN3 (0.733); YJR112W-A (0.704); YET2 (0.677); ENP1 (0.651); GIM4 (0.648); TUB3 (0.628); NRP1 (0.604); KAR3 (0.603); BIK1 (0.587); NUF2 (0.584); IRC10 (0.571); TUB1 (0.548); VPS9 (0.543)
Homologues (species, bitscore): ARL3 (Homo sapiens, 117.1); Arl3 (Mus musculus, 114.8); arl3 (Danio rerio, 119.0); arl3 (Xenopus tropicalis, 117.5); Arl2 (Drosophila melanogaster, 107.5); evl-20 (Caenorhabditis elegans, 121.7); TTN5 (Arabidopsis thaliana, 115.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:584652-585227:+ | gene-YMR138W_AKU4011 | rna-NM_001182640.1_AKU4011 | cds-NP_013858.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:87304-87879:- | gene-YMR138W_BG1 | rna-NM_001182640.1_BG1 | cds-NP_013858.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:527835-528410:+ | gene-YMR138W_Bruggeman | rna-NM_001182640.1_Bruggeman | cds-NP_013858.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:530050-530625:+ | gene-YMR138W_CAT1 | rna-NM_001182640.1_CAT1 | cds-NP_013858.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:517576-518151:+ | gene-YMR138W_CBS1585 | rna-NM_001182640.1_CBS1585 | cds-NP_013858.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:521465-522040:+ | gene-YMR138W_CBS436 | rna-NM_001182640.1_CBS436 | cds-NP_013858.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:630569-631144:+ | gene-YMR138W_CBS6412 | rna-NM_001182640.1_CBS6412 | cds-NP_013858.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:516136-516711:+ | gene-YMR138W_CBS6413 | rna-NM_001182640.1_CBS6413 | cds-NP_013858.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:539674-540249:+ | gene-YMR138W_CENPK1137D | rna-NM_001182640.1_CENPK1137D | cds-NP_013858.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:515764-516339:+ | gene-YMR138W_EthanolRed | rna-NM_001182640.1_EthanolRed | cds-NP_013858.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:522763-523338:+ | gene-YMR138W_FaliES1 | rna-NM_001182640.1_FaliES1 | cds-NP_013858.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:4707-5282:- | gene-YMR138W_JAY291 | rna-NM_001182640.1_JAY291 | cds-NP_013858.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:522560-523135:+ | gene-YMR138W_MUCL30387 | rna-NM_001182640.1_MUCL30387 | cds-NP_013858.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:528092-528667:+ | gene-YMR138W_MUCL30388 | rna-NM_001182640.1_MUCL30388 | cds-NP_013858.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:518277-518852:+ | gene-YMR138W_MUCL39482 | rna-NM_001182640.1_MUCL39482 | cds-NP_013858.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:524571-525146:+ | gene-YMR138W_MUCL42920 | rna-NM_001182640.1_MUCL42920 | cds-NP_013858.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:545109-545684:+ | gene-YMR138W_NCIM3186 | rna-NM_001182640.1_NCIM3186 | cds-NP_013858.1_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:517915-518490:+ | gene-YMR138W_NCYC1407 | rna-NM_001182640.1_NCYC1407 | cds-NP_013858.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:528352-528927:+ | gene-YMR138W_PE2H3 | rna-NM_001182640.1_PE2H3 | cds-NP_013858.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:528811-529386:+ | gene-YMR138W_PE2H4 | rna-NM_001182640.1_PE2H4 | cds-NP_013858.1_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:545155-545730:+ | gene-YMR138W_S288C | rna-NM_001182640.1_S288C | cds-NP_013858.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:25539-26114:- | gene-YMR138W_SA1 | rna-NM_001182640.1_SA1 | cds-NP_013858.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:518162-518737:+ | gene-YMR138W_ThermosaccDry | rna-NM_001182640.1_ThermosaccDry | cds-NP_013858.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:530865-531440:+ | gene-YMR138W_VR1 | rna-NM_001182640.1_VR1 | cds-NP_013858.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:493306-493881:+ | gene-YMR138W_ZTW1 | rna-NM_001182640.1_ZTW1 | cds-NP_013858.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:529600-530175:+ | gene-YMR138W_Sparadoxus | rna-NM_001182640.1_Sparadoxus | cds-NP_013858.1_Sparadoxus | 86.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |