Gene name: CIN1
Reference locus (S288C): YOR349W
Gene biotype: protein_coding
Description: Chromosome instability protein 1; Tubulin folding factor D involved in beta-tubulin (Tub2p) folding; isolated as mutant with increased chromosome loss and sensitivity to benomyl
Top 10 interactors (score): PAC2 (0.999); CIN4 (0.999); TUB2 (0.991); ALF1 (0.991); RBL2 (0.99); TUB3 (0.985); CIN2 (0.969); MAD2 (0.934); TUB1 (0.93); CIN8 (0.929); GIM3 (0.878); BIK1 (0.874); RCN2 (0.856); GIM4 (0.845); KIP2 (0.83); PAN3 (0.83); GIM5 (0.823); BIM1 (0.823); MAD1 (0.822); VPS72 (0.82)
Homologues (species, bitscore): CG7261 (Drosophila melanogaster, 58.9); F16D3.4 (Caenorhabditis elegans, 55.5); TTN1 (Arabidopsis thaliana, 53.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:976371-979415:+ | gene-YOR349W_AKU4011 | rna-NM_001183769.3_AKU4011 | cds-NP_014994.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:13556-16600:+ | gene-YOR349W_BG1 | rna-NM_001183769.3_BG1 | cds-NP_014994.3_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:961191-964235:+ | gene-YOR349W_Bruggeman | rna-NM_001183769.3_Bruggeman | cds-NP_014994.3_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:961022-964066:+ | gene-YOR349W_CAT1 | rna-NM_001183769.3_CAT1 | cds-NP_014994.3_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:960779-963823:+ | gene-YOR349W_CBS1585 | rna-NM_001183769.3_CBS1585 | cds-NP_014994.3_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:955599-958643:+ | gene-YOR349W_CBS436 | rna-NM_001183769.3_CBS436 | cds-NP_014994.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:190081-193125:+ | gene-YOR349W_CBS6412 | rna-NM_001183769.3_CBS6412 | cds-NP_014994.3_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:965053-968097:+ | gene-YOR349W_CBS6413 | rna-NM_001183769.3_CBS6413 | cds-NP_014994.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:989577-992621:+ | gene-YOR349W_CENPK1137D | rna-NM_001183769.3_CENPK1137D | cds-NP_014994.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:205076-208120:+ | gene-YOR349W_EthanolRed | rna-NM_001183769.3_EthanolRed | cds-NP_014994.3_EthanolRed | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:957905-960949:+ | gene-YOR349W_FaliES1 | rna-NM_001183769.3_FaliES1 | cds-NP_014994.3_FaliES1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:44713-47757:- | gene-YOR349W_JAY291 | rna-NM_001183769.3_JAY291 | cds-NP_014994.3_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:970522-973566:+ | gene-YOR349W_MUCL30387 | rna-NM_001183769.3_MUCL30387 | cds-NP_014994.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:978536-981580:+ | gene-YOR349W_MUCL30388 | rna-NM_001183769.3_MUCL30388 | cds-NP_014994.3_MUCL30388 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:967314-970358:+ | gene-YOR349W_MUCL39482 | rna-NM_001183769.3_MUCL39482 | cds-NP_014994.3_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:974923-977967:+ | gene-YOR349W_MUCL42920 | rna-NM_001183769.3_MUCL42920 | cds-NP_014994.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:989678-992722:+ | gene-YOR349W_NCIM3186 | rna-NM_001183769.3_NCIM3186 | cds-NP_014994.3_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:968325-971369:+ | gene-YOR349W_NCYC1407 | rna-NM_001183769.3_NCYC1407 | cds-NP_014994.3_NCYC1407 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:963587-966631:+ | gene-YOR349W_PE2H3 | rna-NM_001183769.3_PE2H3 | cds-NP_014994.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:979939-982983:+ | gene-YOR349W_PE2H4 | rna-NM_001183769.3_PE2H4 | cds-NP_014994.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:989789-992833:+ | gene-YOR349W_S288C | rna-NM_001183769.3_S288C | cds-NP_014994.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:94245-97289:+ | gene-YOR349W_SA1 | rna-NM_001183769.3_SA1 | cds-NP_014994.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:957075-960119:+ | gene-YOR349W_ThermosaccDry | rna-NM_001183769.3_ThermosaccDry | cds-NP_014994.3_ThermosaccDry | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1018338-1021382:+ | gene-YOR349W_VR1 | rna-NM_001183769.3_VR1 | cds-NP_014994.3_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:689805-692849:+ | gene-YOR349W_ZTW1 | rna-NM_001183769.3_ZTW1 | cds-NP_014994.3_ZTW1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:963339-966392:+ | gene-YOR349W_Sparadoxus | rna-NM_001183769.3_Sparadoxus | cds-NP_014994.3_Sparadoxus | 85.8 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |