Gene name: CIC1
Reference locus (S288C): YHR052W
Gene biotype: protein_coding
Description: Proteasome-interacting protein CIC1; Essential protein that interacts with proteasome components; has a potential role in proteasome substrate specificity; also copurifies with 66S pre-ribosomal particles
Top 10 interactors (score): RRS1 (0.999); RPF2 (0.999); DBP3 (0.999); NOP12 (0.999); NSA2 (0.999); NOG2 (0.999); MAK16 (0.999); NOC2 (0.999); CBF5 (0.999); BRX1 (0.999); HAS1 (0.999); NOP58 (0.999); NSA1 (0.999); RRP1 (0.999); RLP24 (0.999); RPF1 (0.999); NOP2 (0.999); NOP15 (0.999); SPB1 (0.999); PUF6 (0.999)
Homologues (species, bitscore): RSL1D1 (Homo sapiens, 50.8); Rsl1d1 (Mus musculus, 62.8); RSL1D1 (Xenopus tropicalis, 57.8); AT3G58660 (Arabidopsis thaliana, 58.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:199109-200239:+ | gene-YHR052W_AKU4011 | rna-NM_001179182.1_AKU4011 | cds-NP_011919.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000053.1:119364-120494:+ | gene-YHR052W_BG1 | rna-NM_001179182.1_BG1 | cds-NP_011919.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:206862-207992:+ | gene-YHR052W_Bruggeman | rna-NM_001179182.1_Bruggeman | cds-NP_011919.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:201655-202785:+ | gene-YHR052W_CAT1 | rna-NM_001179182.1_CAT1 | cds-NP_011919.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:198215-199345:+ | gene-YHR052W_CBS1585 | rna-NM_001179182.1_CBS1585 | cds-NP_011919.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:193723-194853:+ | gene-YHR052W_CBS436 | rna-NM_001179182.1_CBS436 | cds-NP_011919.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:198447-199577:+ | gene-YHR052W_CBS6412 | rna-NM_001179182.1_CBS6412 | cds-NP_011919.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:199279-200409:+ | gene-YHR052W_CBS6413 | rna-NM_001179182.1_CBS6413 | cds-NP_011919.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:204108-205238:+ | gene-YHR052W_CENPK1137D | rna-NM_001179182.1_CENPK1137D | cds-NP_011919.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:198607-199737:+ | gene-YHR052W_EthanolRed | rna-NM_001179182.1_EthanolRed | cds-NP_011919.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:199584-200714:+ | gene-YHR052W_FaliES1 | rna-NM_001179182.1_FaliES1 | cds-NP_011919.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000244.1:16335-17465:+ | gene-YHR052W_JAY291 | rna-NM_001179182.1_JAY291 | cds-NP_011919.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:206321-207451:+ | gene-YHR052W_MUCL30387 | rna-NM_001179182.1_MUCL30387 | cds-NP_011919.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:206496-207626:+ | gene-YHR052W_MUCL30388 | rna-NM_001179182.1_MUCL30388 | cds-NP_011919.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:198500-199630:+ | gene-YHR052W_MUCL39482 | rna-NM_001179182.1_MUCL39482 | cds-NP_011919.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:205405-206535:+ | gene-YHR052W_MUCL42920 | rna-NM_001179182.1_MUCL42920 | cds-NP_011919.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:210730-211860:+ | gene-YHR052W_NCIM3186 | rna-NM_001179182.1_NCIM3186 | cds-NP_011919.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:198515-199645:+ | gene-YHR052W_NCYC1407 | rna-NM_001179182.1_NCYC1407 | cds-NP_011919.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:200702-201832:+ | gene-YHR052W_PE2H3 | rna-NM_001179182.1_PE2H3 | cds-NP_011919.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:208149-209279:+ | gene-YHR052W_PE2H4 | rna-NM_001179182.1_PE2H4 | cds-NP_011919.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:210848-211978:+ | gene-YHR052W_S288C | rna-NM_001179182.1_S288C | cds-NP_011919.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000014.1:146618-147748:- | gene-YHR052W_SA1 | rna-NM_001179182.1_SA1 | cds-NP_011919.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:200675-201805:+ | gene-YHR052W_ThermosaccDry | rna-NM_001179182.1_ThermosaccDry | cds-NP_011919.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:207206-208336:+ | gene-YHR052W_VR1 | rna-NM_001179182.1_VR1 | cds-NP_011919.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:192219-193350:+ | gene-YHR052W_ZTW1 | rna-NM_001179182.1_ZTW1 | cds-NP_011919.1_ZTW1 | 99.8 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:197799-198929:+ | gene-YHR052W_Sparadoxus | rna-NM_001179182.1_Sparadoxus | cds-NP_011919.1_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |