Gene name: CHS5
Reference locus (S288C): YLR330W
Gene biotype: protein_coding
Description: Chitin biosynthesis protein CHS5; Component of the exomer complex; the exomer which also contains Csh6p, Bch1p, Bch2p, and Bud7, is involved in the export of select proteins, such as chitin synthase Chs3p, from the Golgi to the plasma membrane; interacts selectively with the activated, GTP-bound form of Arf1p; Chs5p is the only protein with a BRCT domain that is not localized to the nucleus
Top 10 interactors (score): BCH1 (0.999); BUD7 (0.999); CHS6 (0.999); BCH2 (0.998); ARF1 (0.997); CHS3 (0.994); CTR9 (0.981); CHS7 (0.947); QRI1 (0.937); SKT5 (0.905); SEC7 (0.898); FUS1 (0.892); RTF1 (0.89); CDC73 (0.886); FUS2 (0.826); GAS1 (0.82); CHS1 (0.78); SPT5 (0.776); BCK1 (0.765); PAF1 (0.728)
Homologues (species, bitscore): Tro (Mus musculus, 65.9); ENSXETP00000038142 (Xenopus tropicalis, 57.8); fig-1 (Caenorhabditis elegans, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:736610-738604:+ | gene-YLR330W_AKU4011 | rna-NM_001182219.1_AKU4011 | cds-NP_013434.1_AKU4011 | 97.4 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:3858-5768:+ | gene-YLR330W_BG1 | rna-NM_001182219.1_BG1 | cds-NP_013434.1_BG1 | 93.4 | 94.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:772203-774956:+ | gene-YLR330W_Bruggeman | rna-NM_001182219.1_Bruggeman | cds-NP_013434.1_Bruggeman | 72.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:770599-772509:+ | gene-YLR330W_CAT1 | rna-NM_001182219.1_CAT1 | cds-NP_013434.1_CAT1 | 93.4 | 94.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:771527-773521:+ | gene-YLR330W_CBS1585 | rna-NM_001182219.1_CBS1585 | cds-NP_013434.1_CBS1585 | 97.4 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:755635-757566:+ | gene-YLR330W_CBS436 | rna-NM_001182219.1_CBS436 | cds-NP_013434.1_CBS436 | 94.3 | 95.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:808938-810932:+ | gene-YLR330W_CBS6412 | rna-NM_001182219.1_CBS6412 | cds-NP_013434.1_CBS6412 | 97.4 | 98.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:772198-774192:+ | gene-YLR330W_CBS6413 | rna-NM_001182219.1_CBS6413 | cds-NP_013434.1_CBS6413 | 97.4 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:772279-774298:+ | gene-YLR330W_CENPK1137D | rna-NM_001182219.1_CENPK1137D | cds-NP_013434.1_CENPK1137D | 94.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:729407-731422:+ | gene-YLR330W_EthanolRed | rna-NM_001182219.1_EthanolRed | cds-NP_013434.1_EthanolRed | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:758608-760623:+ | gene-YLR330W_FaliES1 | rna-NM_001182219.1_FaliES1 | cds-NP_013434.1_FaliES1 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000296.1:7325-9256:- | gene-YLR330W_JAY291 | rna-NM_001182219.1_JAY291 | cds-NP_013434.1_JAY291 | 94.2 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:771182-773176:+ | gene-YLR330W_MUCL30387 | rna-NM_001182219.1_MUCL30387 | cds-NP_013434.1_MUCL30387 | 97.9 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:776765-778759:+ | gene-YLR330W_MUCL30388 | rna-NM_001182219.1_MUCL30388 | cds-NP_013434.1_MUCL30388 | 97.9 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:772767-774761:+ | gene-YLR330W_MUCL39482 | rna-NM_001182219.1_MUCL39482 | cds-NP_013434.1_MUCL39482 | 97.4 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:767929-769923:+ | gene-YLR330W_MUCL42920 | rna-NM_001182219.1_MUCL42920 | cds-NP_013434.1_MUCL42920 | 97.9 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:787638-789653:+ | gene-YLR330W_NCIM3186 | rna-NM_001182219.1_NCIM3186 | cds-NP_013434.1_NCIM3186 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:782108-784102:+ | gene-YLR330W_NCYC1407 | rna-NM_001182219.1_NCYC1407 | cds-NP_013434.1_NCYC1407 | 97.4 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:769398-771329:+ | gene-YLR330W_PE2H3 | rna-NM_001182219.1_PE2H3 | cds-NP_013434.1_PE2H3 | 94.2 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:769142-771073:+ | gene-YLR330W_PE2H4 | rna-NM_001182219.1_PE2H4 | cds-NP_013434.1_PE2H4 | 94.2 | 95.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:787664-789679:+ | gene-YLR330W_S288C | rna-NM_001182219.1_S288C | cds-NP_013434.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000007.1:259290-261200:- | gene-YLR330W_SA1 | rna-NM_001182219.1_SA1 | cds-NP_013434.1_SA1 | 93.4 | 94.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:760499-762514:+ | gene-YLR330W_ThermosaccDry | rna-NM_001182219.1_ThermosaccDry | cds-NP_013434.1_ThermosaccDry | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:772615-774588:+ | gene-YLR330W_VR1 | rna-NM_001182219.1_VR1 | cds-NP_013434.1_VR1 | 96.1 | 97.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000025.1:98911-100904:+ | gene-YLR330W_ZTW1 | rna-NM_001182219.1_ZTW1 | cds-NP_013434.1_ZTW1 | 97.4 | 98.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:747009-748991:+ | gene-YLR330W_Sparadoxus | rna-NM_001182219.1_Sparadoxus | cds-NP_013434.1_Sparadoxus | 81.1 | 97.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |