Gene name: CHO1
Reference locus (S288C): YER026C
Gene biotype: protein_coding
Description: CDP-diacylglycerol--serine O-phosphatidyltransferase; Phosphatidylserine synthase; functions in phospholipid biosynthesis; catalyzes the reaction CDP-diaclyglycerol + L-serine = CMP + L-1-phosphatidylserine, transcriptionally repressed by myo-inositol and choline
Top 10 interactors (score): OPI3 (0.997); PSD1 (0.996); PGS1 (0.995); CHO2 (0.994); PSD2 (0.994); PIS1 (0.994); CDS1 (0.993); CRD1 (0.976); ALE1 (0.96); EPT1 (0.954); SPO14 (0.942); SER2 (0.918); ITR1 (0.915); CYS4 (0.905); SHM1 (0.901); SHM2 (0.901); ILV1 (0.9); CHA1 (0.9); TRP5 (0.9); AGX1 (0.9)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:201671-202501:- | gene-YER026C_AKU4011 | rna-NM_001178917.3_AKU4011 | cds-NP_010943.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:223241-224071:+ | gene-YER026C_BG1 | rna-NM_001178917.3_BG1 | cds-NP_010943.3_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:210558-211388:- | gene-YER026C_Bruggeman | rna-NM_001178917.3_Bruggeman | cds-NP_010943.3_Bruggeman | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:204675-205505:- | gene-YER026C_CAT1 | rna-NM_001178917.3_CAT1 | cds-NP_010943.3_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:201594-202424:- | gene-YER026C_CBS1585 | rna-NM_001178917.3_CBS1585 | cds-NP_010943.3_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:203526-204356:- | gene-YER026C_CBS436 | rna-NM_001178917.3_CBS436 | cds-NP_010943.3_CBS436 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:201838-202668:- | gene-YER026C_CBS6412 | rna-NM_001178917.3_CBS6412 | cds-NP_010943.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:207104-207934:- | gene-YER026C_CBS6413 | rna-NM_001178917.3_CBS6413 | cds-NP_010943.3_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:205583-206413:- | gene-YER026C_CENPK1137D | rna-NM_001178917.3_CENPK1137D | cds-NP_010943.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:202303-203133:- | gene-YER026C_EthanolRed | rna-NM_001178917.3_EthanolRed | cds-NP_010943.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:202568-203398:- | gene-YER026C_FaliES1 | rna-NM_001178917.3_FaliES1 | cds-NP_010943.3_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000192.1:326-1156:- | gene-YER026C_JAY291 | rna-NM_001178917.3_JAY291 | cds-NP_010943.3_JAY291 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:205989-206819:- | gene-YER026C_MUCL30387 | rna-NM_001178917.3_MUCL30387 | cds-NP_010943.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:202222-203052:- | gene-YER026C_MUCL30388 | rna-NM_001178917.3_MUCL30388 | cds-NP_010943.3_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:200638-201468:- | gene-YER026C_MUCL39482 | rna-NM_001178917.3_MUCL39482 | cds-NP_010943.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:207720-208550:- | gene-YER026C_MUCL42920 | rna-NM_001178917.3_MUCL42920 | cds-NP_010943.3_MUCL42920 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:207643-208473:- | gene-YER026C_NCIM3186 | rna-NM_001178917.3_NCIM3186 | cds-NP_010943.3_NCIM3186 | 98.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:205709-206539:- | gene-YER026C_NCYC1407 | rna-NM_001178917.3_NCYC1407 | cds-NP_010943.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:216334-217164:- | gene-YER026C_PE2H3 | rna-NM_001178917.3_PE2H3 | cds-NP_010943.3_PE2H3 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:206274-207104:- | gene-YER026C_PE2H4 | rna-NM_001178917.3_PE2H4 | cds-NP_010943.3_PE2H4 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:207644-208474:- | gene-YER026C_S288C | rna-NM_001178917.3_S288C | cds-NP_010943.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:35209-36039:+ | gene-YER026C_SA1 | rna-NM_001178917.3_SA1 | cds-NP_010943.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:203339-204169:- | gene-YER026C_ThermosaccDry | rna-NM_001178917.3_ThermosaccDry | cds-NP_010943.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:202430-203260:- | gene-YER026C_VR1 | rna-NM_001178917.3_VR1 | cds-NP_010943.3_VR1 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:200550-201380:- | gene-YER026C_ZTW1 | rna-NM_001178917.3_ZTW1 | cds-NP_010943.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:204438-205268:- | gene-YER026C_Sparadoxus | rna-NM_001178917.3_Sparadoxus | cds-NP_010943.3_Sparadoxus | 92.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |