Gene name: CHD1
Reference locus (S288C): YER164W
Gene biotype: protein_coding
Description: Chromo domain-containing protein 1; Chromatin remodeler that regulates various aspects of transcription; acts in in conjunction with Isw1b to regulate chromatin structure and maintain chromatin integrity during transcription elongation by RNAP II by preventing trans-histone exchange over coding regions; contains a chromo domain, a helicase domain and a DNA-binding domain; component of both the SAGA and SLIK complexes
Top 10 interactors (score): SPT16 (0.999); SPT6 (0.999); POB3 (0.999); HHT1 (0.998); GCN5 (0.998); RTF1 (0.996); SPT4 (0.994); SGF29 (0.993); DST1 (0.992); TRA1 (0.991); SPT7 (0.99); SET1 (0.989); HHT2 (0.988); SPN1 (0.988); SET2 (0.988); NGG1 (0.983); HHF1 (0.982); UBP8 (0.98); SPT20 (0.98); TAF5 (0.975)
Homologues (species, bitscore): CHD1 (Homo sapiens, 753.8); Chd1 (Mus musculus, 752.7); chd2 (Danio rerio, 758.1); chd2 (Xenopus tropicalis, 729.2); Chd1 (Drosophila melanogaster, 714.1); chd-1 (Caenorhabditis elegans, 705.7); CHR5 (Arabidopsis thaliana, 663.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:486947-491353:+ | gene-YER164W_AKU4011 | rna-NM_001179054.1_AKU4011 | cds-NP_011091.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000176.1:42021-46427:- | gene-YER164W_BG1 | rna-NM_001179054.1_BG1 | cds-NP_011091.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:499653-504059:+ | gene-YER164W_Bruggeman | rna-NM_001179054.1_Bruggeman | cds-NP_011091.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:486251-490657:+ | gene-YER164W_CAT1 | rna-NM_001179054.1_CAT1 | cds-NP_011091.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:486755-491161:+ | gene-YER164W_CBS1585 | rna-NM_001179054.1_CBS1585 | cds-NP_011091.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:496637-501043:+ | gene-YER164W_CBS436 | rna-NM_001179054.1_CBS436 | cds-NP_011091.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:484731-489137:+ | gene-YER164W_CBS6412 | rna-NM_001179054.1_CBS6412 | cds-NP_011091.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:493301-497707:+ | gene-YER164W_CBS6413 | rna-NM_001179054.1_CBS6413 | cds-NP_011091.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:503161-507567:+ | gene-YER164W_CENPK1137D | rna-NM_001179054.1_CENPK1137D | cds-NP_011091.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:492894-497300:+ | gene-YER164W_EthanolRed | rna-NM_001179054.1_EthanolRed | cds-NP_011091.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:493830-498236:+ | gene-YER164W_FaliES1 | rna-NM_001179054.1_FaliES1 | cds-NP_011091.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000169.1:41673-46079:- | gene-YER164W_JAY291 | rna-NM_001179054.1_JAY291 | cds-NP_011091.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:486995-491401:+ | gene-YER164W_MUCL30387 | rna-NM_001179054.1_MUCL30387 | cds-NP_011091.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:489901-494307:+ | gene-YER164W_MUCL30388 | rna-NM_001179054.1_MUCL30388 | cds-NP_011091.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:482712-487118:+ | gene-YER164W_MUCL39482 | rna-NM_001179054.1_MUCL39482 | cds-NP_011091.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:497218-501624:+ | gene-YER164W_MUCL42920 | rna-NM_001179054.1_MUCL42920 | cds-NP_011091.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:505391-509797:+ | gene-YER164W_NCIM3186 | rna-NM_001179054.1_NCIM3186 | cds-NP_011091.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:492169-496575:+ | gene-YER164W_NCYC1407 | rna-NM_001179054.1_NCYC1407 | cds-NP_011091.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:508070-512476:+ | gene-YER164W_PE2H3 | rna-NM_001179054.1_PE2H3 | cds-NP_011091.1_PE2H3 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:498011-502417:+ | gene-YER164W_PE2H4 | rna-NM_001179054.1_PE2H4 | cds-NP_011091.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:505392-509798:+ | gene-YER164W_S288C | rna-NM_001179054.1_S288C | cds-NP_011091.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000030.1:57557-61963:+ | gene-YER164W_SA1 | rna-NM_001179054.1_SA1 | cds-NP_011091.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:494630-499036:+ | gene-YER164W_ThermosaccDry | rna-NM_001179054.1_ThermosaccDry | cds-NP_011091.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:487916-492322:+ | gene-YER164W_VR1 | rna-NM_001179054.1_VR1 | cds-NP_011091.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000011.1:7482-11888:+ | gene-YER164W_ZTW1 | rna-NM_001179054.1_ZTW1 | cds-NP_011091.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:495834-500240:+ | gene-YER164W_Sparadoxus | rna-NM_001179054.1_Sparadoxus | cds-NP_011091.1_Sparadoxus | 91.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |