Gene name: CHC1
Reference locus (S288C): YGL206C
Gene biotype: protein_coding
Description: Clathrin heavy chain; subunit of the major coat protein involved in intracellular protein transport and endocytosis; the clathrin triskelion is a trimeric molecule composed of three heavy chains that radiate from a vertex and three light chains which bind noncovalently near the vertex of the triskelion; the light chain (CLC1) is thought to regulate function
Top 10 interactors (score): SWA2 (0.999); APL3 (0.999); CLC1 (0.999); APL4 (0.998); APL2 (0.997); APL1 (0.996); APS2 (0.995); ENT1 (0.995); ENT5 (0.995); SLA2 (0.995); APM4 (0.993); EDE1 (0.992); TEP1 (0.99); ENT3 (0.99); VPS1 (0.989); ENT2 (0.988); YAP1801 (0.987); SEC31 (0.987); VPS27 (0.986); YAP1802 (0.985)
Homologues (species, bitscore): CLTC (Homo sapiens, 1677.5); Cltc (Mus musculus, 1679.8); cltca (Danio rerio, 1672.5); CLTCL1 (Xenopus tropicalis, 1686.4); Chc (Drosophila melanogaster, 1644.8); chc-1 (Caenorhabditis elegans, 1574.3); AT3G08530 (Arabidopsis thaliana, 1469.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:103877-108838:- | gene-YGL206C_AKU4011 | rna-NM_001181071.1_AKU4011 | cds-NP_011309.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000175.1:96954-101915:- | gene-YGL206C_BG1 | rna-NM_001181071.1_BG1 | cds-NP_011309.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:105267-110228:- | gene-YGL206C_Bruggeman | rna-NM_001181071.1_Bruggeman | cds-NP_011309.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:103065-108026:- | gene-YGL206C_CAT1 | rna-NM_001181071.1_CAT1 | cds-NP_011309.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:108198-113159:- | gene-YGL206C_CBS1585 | rna-NM_001181071.1_CBS1585 | cds-NP_011309.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:103762-108723:- | gene-YGL206C_CBS436 | rna-NM_001181071.1_CBS436 | cds-NP_011309.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:95329-100290:- | gene-YGL206C_CBS6412 | rna-NM_001181071.1_CBS6412 | cds-NP_011309.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:102033-106994:- | gene-YGL206C_CBS6413 | rna-NM_001181071.1_CBS6413 | cds-NP_011309.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:102575-107536:- | gene-YGL206C_CENPK1137D | rna-NM_001181071.1_CENPK1137D | cds-NP_011309.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:94698-99659:- | gene-YGL206C_EthanolRed | rna-NM_001181071.1_EthanolRed | cds-NP_011309.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:95541-100502:- | gene-YGL206C_FaliES1 | rna-NM_001181071.1_FaliES1 | cds-NP_011309.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000397.1:21942-26903:- | gene-YGL206C_JAY291 | rna-NM_001181071.1_JAY291 | cds-NP_011309.1_JAY291 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:104313-109274:- | gene-YGL206C_MUCL30387 | rna-NM_001181071.1_MUCL30387 | cds-NP_011309.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:106495-111456:- | gene-YGL206C_MUCL30388 | rna-NM_001181071.1_MUCL30388 | cds-NP_011309.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:104711-109672:- | gene-YGL206C_MUCL39482 | rna-NM_001181071.1_MUCL39482 | cds-NP_011309.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:107816-112777:- | gene-YGL206C_MUCL42920 | rna-NM_001181071.1_MUCL42920 | cds-NP_011309.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:102543-107504:- | gene-YGL206C_NCIM3186 | rna-NM_001181071.1_NCIM3186 | cds-NP_011309.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:96433-101394:- | gene-YGL206C_NCYC1407 | rna-NM_001181071.1_NCYC1407 | cds-NP_011309.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:99259-104220:- | gene-YGL206C_PE2H3 | rna-NM_001181071.1_PE2H3 | cds-NP_011309.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:98807-103768:- | gene-YGL206C_PE2H4 | rna-NM_001181071.1_PE2H4 | cds-NP_011309.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:102543-107504:- | gene-YGL206C_S288C | rna-NM_001181071.1_S288C | cds-NP_011309.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:267775-272736:+ | gene-YGL206C_SA1 | rna-NM_001181071.1_SA1 | cds-NP_011309.1_SA1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:95802-100763:- | gene-YGL206C_ThermosaccDry | rna-NM_001181071.1_ThermosaccDry | cds-NP_011309.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:103674-108635:- | gene-YGL206C_VR1 | rna-NM_001181071.1_VR1 | cds-NP_011309.1_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:94838-99799:- | gene-YGL206C_ZTW1 | rna-NM_001181071.1_ZTW1 | cds-NP_011309.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:102040-107001:- | gene-YGL206C_Sparadoxus | rna-NM_001181071.1_Sparadoxus | cds-NP_011309.1_Sparadoxus | 91.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |