Gene name: CHA4
Reference locus (S288C): YLR098C
Gene biotype: protein_coding
Description: Activatory protein CHA4; DNA binding transcriptional activator; mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain
Top 10 interactors (score): CHA1 (0.811); RTS2 (0.695); YDL016C (0.692); FKH1 (0.675); OM14 (0.67); IRC3 (0.655); NDT80 (0.652); SER3 (0.615); TEC1 (0.598); LEU3 (0.574); PET8 (0.574); PUT3 (0.573); JLP1 (0.538); TAN1 (0.533); USV1 (0.527); CLU1 (0.5); YLR001C (0.486); REX2 (0.483); RGM1 (0.483); SPT15 (0.483)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:320017-321963:- | gene-YLR098C_AKU4011 | rna-NM_001181985.1_AKU4011 | cds-NP_013199.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:283213-285159:- | gene-YLR098C_BG1 | rna-NM_001181985.1_BG1 | cds-NP_013199.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:329884-331830:- | gene-YLR098C_Bruggeman | rna-NM_001181985.1_Bruggeman | cds-NP_013199.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:330228-332174:- | gene-YLR098C_CAT1 | rna-NM_001181985.1_CAT1 | cds-NP_013199.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:327161-329107:- | gene-YLR098C_CBS1585 | rna-NM_001181985.1_CBS1585 | cds-NP_013199.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:317745-319691:- | gene-YLR098C_CBS436 | rna-NM_001181985.1_CBS436 | cds-NP_013199.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:325578-327524:- | gene-YLR098C_CBS6412 | rna-NM_001181985.1_CBS6412 | cds-NP_013199.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:327427-329373:- | gene-YLR098C_CBS6413 | rna-NM_001181985.1_CBS6413 | cds-NP_013199.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:322532-324478:- | gene-YLR098C_CENPK1137D | rna-NM_001181985.1_CENPK1137D | cds-NP_013199.1_CENPK1137D | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:319578-321524:- | gene-YLR098C_EthanolRed | rna-NM_001181985.1_EthanolRed | cds-NP_013199.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:319394-321340:- | gene-YLR098C_FaliES1 | rna-NM_001181985.1_FaliES1 | cds-NP_013199.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000129.1:94346-96292:- | gene-YLR098C_JAY291 | rna-NM_001181985.1_JAY291 | cds-NP_013199.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:327263-329209:- | gene-YLR098C_MUCL30387 | rna-NM_001181985.1_MUCL30387 | cds-NP_013199.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:334928-336874:- | gene-YLR098C_MUCL30388 | rna-NM_001181985.1_MUCL30388 | cds-NP_013199.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:327669-329615:- | gene-YLR098C_MUCL39482 | rna-NM_001181985.1_MUCL39482 | cds-NP_013199.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:327564-329510:- | gene-YLR098C_MUCL42920 | rna-NM_001181985.1_MUCL42920 | cds-NP_013199.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:337501-339447:- | gene-YLR098C_NCIM3186 | rna-NM_001181985.1_NCIM3186 | cds-NP_013199.1_NCIM3186 | 95.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:319732-321678:- | gene-YLR098C_NCYC1407 | rna-NM_001181985.1_NCYC1407 | cds-NP_013199.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:325511-327457:- | gene-YLR098C_PE2H3 | rna-NM_001181985.1_PE2H3 | cds-NP_013199.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:325252-327198:- | gene-YLR098C_PE2H4 | rna-NM_001181985.1_PE2H4 | cds-NP_013199.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:337527-339473:- | gene-YLR098C_S288C | rna-NM_001181985.1_S288C | cds-NP_013199.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000033.1:34624-36570:+ | gene-YLR098C_SA1 | rna-NM_001181985.1_SA1 | cds-NP_013199.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:319570-321516:- | gene-YLR098C_ThermosaccDry | rna-NM_001181985.1_ThermosaccDry | cds-NP_013199.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:333752-335698:- | gene-YLR098C_VR1 | rna-NM_001181985.1_VR1 | cds-NP_013199.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:318996-320942:- | gene-YLR098C_ZTW1 | rna-NM_001181985.1_ZTW1 | cds-NP_013199.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:327821-329767:- | gene-YLR098C_Sparadoxus | rna-NM_001181985.1_Sparadoxus | cds-NP_013199.1_Sparadoxus | 91.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | True | False | False |