Gene name: CGR1
Reference locus (S288C): YGL029W
Gene biotype: protein_coding
Description: rRNA-processing protein CGR1; Protein involved in nucleolar integrity and processing of pre-rRNA; has a role in processing rRNA for the 60S ribosome subunit; transcript is induced in response to cytotoxic stress but not genotoxic stress; relocalizes from nucleus to nucleolus upon DNA replication stress
Top 10 interactors (score): RRS1 (0.999); RPF2 (0.999); NOP15 (0.999); MAK16 (0.999); NOG2 (0.999); NSA2 (0.999); CIC1 (0.999); EBP2 (0.999); NUG1 (0.999); RLP24 (0.999); YBL028C (0.998); NOP7 (0.998); RLP7 (0.998); MRT4 (0.998); NOG1 (0.998); BUD20 (0.996); NOP53 (0.996); SSF1 (0.996); LOC1 (0.996); RRP1 (0.996)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:442117-442479:+ | gene-YGL029W_AKU4011 | rna-NM_001180894.1_AKU4011 | cds-NP_011486.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:133654-134016:- | gene-YGL029W_BG1 | rna-NM_001180894.1_BG1 | cds-NP_011486.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:442880-443242:+ | gene-YGL029W_Bruggeman | rna-NM_001180894.1_Bruggeman | cds-NP_011486.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:441122-441484:+ | gene-YGL029W_CAT1 | rna-NM_001180894.1_CAT1 | cds-NP_011486.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:443588-443950:+ | gene-YGL029W_CBS1585 | rna-NM_001180894.1_CBS1585 | cds-NP_011486.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:437984-438346:+ | gene-YGL029W_CBS436 | rna-NM_001180894.1_CBS436 | cds-NP_011486.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:436193-436555:+ | gene-YGL029W_CBS6412 | rna-NM_001180894.1_CBS6412 | cds-NP_011486.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:440262-440624:+ | gene-YGL029W_CBS6413 | rna-NM_001180894.1_CBS6413 | cds-NP_011486.1_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:439901-440263:+ | gene-YGL029W_CENPK1137D | rna-NM_001180894.1_CENPK1137D | cds-NP_011486.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:430461-430823:+ | gene-YGL029W_EthanolRed | rna-NM_001180894.1_EthanolRed | cds-NP_011486.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:433699-434061:+ | gene-YGL029W_FaliES1 | rna-NM_001180894.1_FaliES1 | cds-NP_011486.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:2433-2795:+ | gene-YGL029W_JAY291 | rna-NM_001180894.1_JAY291 | cds-NP_011486.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:440085-440447:+ | gene-YGL029W_MUCL30387 | rna-NM_001180894.1_MUCL30387 | cds-NP_011486.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:442883-443245:+ | gene-YGL029W_MUCL30388 | rna-NM_001180894.1_MUCL30388 | cds-NP_011486.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:439427-439789:+ | gene-YGL029W_MUCL39482 | rna-NM_001180894.1_MUCL39482 | cds-NP_011486.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:448882-449244:+ | gene-YGL029W_MUCL42920 | rna-NM_001180894.1_MUCL42920 | cds-NP_011486.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:440063-440425:+ | gene-YGL029W_NCIM3186 | rna-NM_001180894.1_NCIM3186 | cds-NP_011486.1_NCIM3186 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:433437-433799:+ | gene-YGL029W_NCYC1407 | rna-NM_001180894.1_NCYC1407 | cds-NP_011486.1_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:436098-436460:+ | gene-YGL029W_PE2H3 | rna-NM_001180894.1_PE2H3 | cds-NP_011486.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:441148-441510:+ | gene-YGL029W_PE2H4 | rna-NM_001180894.1_PE2H4 | cds-NP_011486.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:440063-440425:+ | gene-YGL029W_S288C | rna-NM_001180894.1_S288C | cds-NP_011486.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:115172-115534:- | gene-YGL029W_SA1 | rna-NM_001180894.1_SA1 | cds-NP_011486.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:453065-453427:+ | gene-YGL029W_ThermosaccDry | rna-NM_001180894.1_ThermosaccDry | cds-NP_011486.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:543136-543498:+ | gene-YGL029W_VR1 | rna-NM_001180894.1_VR1 | cds-NP_011486.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:431659-432021:+ | gene-YGL029W_ZTW1 | rna-NM_001180894.1_ZTW1 | cds-NP_011486.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:440821-441183:+ | gene-YGL029W_Sparadoxus | rna-NM_001180894.1_Sparadoxus | cds-NP_011486.1_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |