Gene name: CFT2
Reference locus (S288C): YLR115W
Gene biotype: protein_coding
Description: Cleavage factor two protein 2; Subunit of the mRNA cleavage and polyadenlylation factor (CPF); required for pre-mRNA cleavage, polyadenylation and poly(A) site recognition, 43% similarity with the mammalian CPSF-100 protein
Top 10 interactors (score): TFC4 (0.999); MPE1 (0.999); RNA15 (0.999); RNA14 (0.999); SWD2 (0.999); SYC1 (0.999); YSH1 (0.999); PTI1 (0.999); PAP1 (0.999); PTA1 (0.999); REF2 (0.999); SSU72 (0.999); PFS2 (0.999); YTH1 (0.999); CFT1 (0.999); FIP1 (0.999); PCF11 (0.998); GLC7 (0.996); CLP1 (0.979); TAF1 (0.966)
Homologues (species, bitscore): CPSF2 (Homo sapiens, 130.6); Cpsf2 (Mus musculus, 127.1); cpsf2 (Danio rerio, 129.4); cpsf2 (Xenopus tropicalis, 128.3); Cpsf100 (Drosophila melanogaster, 134.8); cpsf-2 (Caenorhabditis elegans, 104.0); CPSF100 (Arabidopsis thaliana, 169.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:360468-363047:+ | gene-YLR115W_AKU4011 | rna-NM_001182002.1_AKU4011 | cds-NP_013216.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:324246-326825:+ | gene-YLR115W_BG1 | rna-NM_001182002.1_BG1 | cds-NP_013216.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:371596-374172:+ | gene-YLR115W_Bruggeman | rna-NM_001182002.1_Bruggeman | cds-NP_013216.1_Bruggeman | 99.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:371509-374088:+ | gene-YLR115W_CAT1 | rna-NM_001182002.1_CAT1 | cds-NP_013216.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:367611-370190:+ | gene-YLR115W_CBS1585 | rna-NM_001182002.1_CBS1585 | cds-NP_013216.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:357851-360430:+ | gene-YLR115W_CBS436 | rna-NM_001182002.1_CBS436 | cds-NP_013216.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:366029-368608:+ | gene-YLR115W_CBS6412 | rna-NM_001182002.1_CBS6412 | cds-NP_013216.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:367876-370455:+ | gene-YLR115W_CBS6413 | rna-NM_001182002.1_CBS6413 | cds-NP_013216.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:363007-365586:+ | gene-YLR115W_CENPK1137D | rna-NM_001182002.1_CENPK1137D | cds-NP_013216.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:360668-363247:+ | gene-YLR115W_EthanolRed | rna-NM_001182002.1_EthanolRed | cds-NP_013216.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:360179-362758:+ | gene-YLR115W_FaliES1 | rna-NM_001182002.1_FaliES1 | cds-NP_013216.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000117.1:30437-33016:- | gene-YLR115W_JAY291 | rna-NM_001182002.1_JAY291 | cds-NP_013216.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:367884-370463:+ | gene-YLR115W_MUCL30387 | rna-NM_001182002.1_MUCL30387 | cds-NP_013216.1_MUCL30387 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:376666-379245:+ | gene-YLR115W_MUCL30388 | rna-NM_001182002.1_MUCL30388 | cds-NP_013216.1_MUCL30388 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:368120-370699:+ | gene-YLR115W_MUCL39482 | rna-NM_001182002.1_MUCL39482 | cds-NP_013216.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:368246-370825:+ | gene-YLR115W_MUCL42920 | rna-NM_001182002.1_MUCL42920 | cds-NP_013216.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:377959-380538:+ | gene-YLR115W_NCIM3186 | rna-NM_001182002.1_NCIM3186 | cds-NP_013216.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:360393-362972:+ | gene-YLR115W_NCYC1407 | rna-NM_001182002.1_NCYC1407 | cds-NP_013216.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:365956-368535:+ | gene-YLR115W_PE2H3 | rna-NM_001182002.1_PE2H3 | cds-NP_013216.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:365697-368276:+ | gene-YLR115W_PE2H4 | rna-NM_001182002.1_PE2H4 | cds-NP_013216.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:377985-380564:+ | gene-YLR115W_S288C | rna-NM_001182002.1_S288C | cds-NP_013216.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000055.1:3860-6439:+ | gene-YLR115W_SA1 | rna-NM_001182002.1_SA1 | cds-NP_013216.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:361389-363968:+ | gene-YLR115W_ThermosaccDry | rna-NM_001182002.1_ThermosaccDry | cds-NP_013216.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:373851-376430:+ | gene-YLR115W_VR1 | rna-NM_001182002.1_VR1 | cds-NP_013216.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:359187-361766:+ | gene-YLR115W_ZTW1 | rna-NM_001182002.1_ZTW1 | cds-NP_013216.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:369009-371600:+ | gene-YLR115W_Sparadoxus | rna-NM_001182002.1_Sparadoxus | cds-NP_013216.1_Sparadoxus | 90.0 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |